I am having the following problem.
When I am using PCAexplorer with the command 'pcaExplorer(dds = dds, dst = vsd)', this dds object is not transferred to the shiny application.
Moreover, I am working with Monocle3, and there is a function (order_cells), which also uses a shiny pop-up. Here, again the data is not present (V1 is not found).
What could be the problem? It seems like the data produced in R studio is not transferred to the shiny applications.
Anybody an idea how to solve this?
Thanks a lot!!!