I have been using a MARS model with the
earth package and I was feeling pretty good about it until I read that the rank of importance of the predictor variables can be somewhat arbitrary, but not to worry, we can average out the variance of the variable importance using
caret::bagEarth. But I am getting an error.
This works great:
earth(flux_x_pro_mat, flux_y, nfold = 4, ncross = 10, keepxy = TRUE)
This is not working:
bagEarth(flux_x_pro_mat, flux_y, B = 50)
Error in terms.formula(formula, data = data) :
duplicated name 'total_N2O' in data frame using '.'
"total_N2O" is the column name of flux_y, a one-column dataframe.
Any chance this is a bug, or should I just try harder?