/bin/sh: r;: command not found

[Aakira3]

I am following the same script with the one shown here and describing the script in RStudio.

Using Seurat with multimodal data

Load in the RNA UMI matrix

library(Seurat)
library(ggplot2)
library(patchwork)

ccbmc.rna <- as.sparse(read.csv(file="multimodal_data/GSE100866_CBMC_8K_13AB_10X-RNA_umi.csv.gz", header = TRUE, sep = ",", row.names = 1))

However , I got the error ; /bin/sh: r;Loadinthedata: command not found

Could you please give me the support for it?

Thanks in advance!

[Jwvz001]

Hi,

I'm not familiar with the seurat-package, but could it be that you need readr::read_csv() to get the gz-file loaded properly? I am not aware base-R read.csv() handles zipped files correctly.

JW