Thank you for the response!
I installed Rstudio separately and did see that PAM worked fine in a direct install. This is not ideal for us because we use a lot of the downstream included tools and libraries in the rocker project.
Here are the Dockerfiles in case it makes a difference!
Here is my primary Dockerfile for this:
FROM rocker/tidyverse:4.0.0
# FROM rocker/verse:3.6.1
# FROM rocker/verse:3.5.2
# FROM rocker/verse:3.4.4
LABEL org.label-schema.license="GPL-2.0" \
org.label-schema.vcs-url="https://github.com/rocker-org/rocker-versioned2" \
org.label-schema.vendor="Rocker Project" \
maintainer="Carl Boettiger <cboettig@ropensci.org>"
ENV CTAN_REPO=http://mirror.ctan.org/systems/texlive/tlnet
ENV PATH=/usr/local/texlive/bin/x86_64-linux:$PATH
RUN /rocker_scripts/install_verse.sh
RUN apt update
RUN apt install -y apt-utils sssd-ad sssd-tools realmd adcli openssh-server
COPY sssd.conf /etc/sssd/sssd.conf
COPY fstab.append /tmp/fstab.append
tidyverse:4.0.0 has a Dockerfile of:
FROM rocker/rstudio:4.0.0
LABEL org.label-schema.license="GPL-2.0" \
org.label-schema.vcs-url="https://github.com/rocker-org/rocker-versioned" \
org.label-schema.vendor="Rocker Project" \
maintainer="Carl Boettiger <cboettig@ropensci.org>"
RUN /rocker_scripts/install_tidyverse.sh
rocker/rstudio:4.0.0:
FROM rocker/r-ver:4.0.0
LABEL org.label-schema.license="GPL-2.0" \
org.label-schema.vcs-url="https://github.com/rocker-org/rocker-versioned" \
org.label-schema.vendor="Rocker Project" \
maintainer="Carl Boettiger <cboettig@ropensci.org>"
ENV S6_VERSION=v1.21.7.0
ENV RSTUDIO_VERSION=1.3.959
ENV PATH=/usr/lib/rstudio-server/bin:$PATH
RUN /rocker_scripts/install_rstudio.sh
RUN /rocker_scripts/install_pandoc.sh
EXPOSE 8787
CMD ["/init"]
rocker/r-ver:4.0.0:
FROM ubuntu:20.04
LABEL org.label-schema.license="GPL-2.0" \
org.label-schema.vcs-url="https://github.com/rocker-org/rocker-versioned" \
org.label-schema.vendor="Rocker Project" \
maintainer="Carl Boettiger <cboettig@ropensci.org>"
ENV R_VERSION=4.0.0
ENV TERM=xterm
ENV LC_ALL=en_US.UTF-8
ENV LANG=en_US.UTF-8
ENV R_HOME=/usr/local/lib/R
ENV CRAN=https://packagemanager.rstudio.com/all/__linux__/focal/291
ENV TZ=Etc/UTC
COPY scripts /rocker_scripts
RUN /rocker_scripts/install_R.sh
CMD ["R"]