Convert of 16s amplicon sequences to column of var1, var 2 .....

General
1

Hi R community,
This is my first time posting. I am analyzing 16S data and have generated an Amplicon Sequence table using the Dada2 pipeline. One column of the table has a list of sequences. I would like to create another column that converts sequence data -> variants. I done some additional trimming and have 76 unique sequences spread out over a column with 543 rows. Full disclosure, I am not strong at writing for loops, which is what I believe I need here, but have tried using levels, recode, and list, to convert each sequence to a variant. Any suggestions/help are welcomed..

thank you,

2

This topic was automatically closed 21 days after the last reply. New replies are no longer allowed.

If you have a query related to it or one of the replies, start a new topic and refer back with a link.