Hi guys,
I'm new to Shiny. Wrote my first app, which works very well locally. I want to upload it to Shinyapps.io for further testing and publication.
However, I can't seem to deploy the app from RStudio. Using the 'publish' button or the deployApp() function, the following error is thrown:
> deployApp()
Preparing to deploy application...DONE
Uploading bundle for application: 3994425...
[WARNING] This document format requires a nonempty <title> element.
Defaulting to '...' as the title.
To specify a title, use 'title' in metadata or --metadata title="...".
Error:
* Unable to determine the location for some packages. Packages must come from a package repository like CRAN or a source control system. Check that
options('repos') refers to a package repository containing the needed package versions.
> options('repos')
$repos
CRAN
"https://cloud.r-project.org"
attr(,"RStudio")
[1] TRUE
The problem is: all packages are installed from CRAN. As an experiment, I deleted all non-base packages, then reinstalled BiocManager and installed all packages from there. Is there any way to figure out which packages it's failing on?
> sessionInfo()
R version 4.0.5 (2021-03-31)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Big Sur 10.16
Matrix products: default
LAPACK: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib
locale:
[1] nl_NL.UTF-8/nl_NL.UTF-8/nl_NL.UTF-8/C/nl_NL.UTF-8/nl_NL.UTF-8
attached base packages:
[1] parallel stats4 stats graphics grDevices utils datasets methods base
other attached packages:
[1] forcats_0.5.1 tidyr_1.1.3 reshape_0.8.8 ggplot2_3.3.3 pheatmap_1.0.12 RColorBrewer_1.1-2
[7] dplyr_1.0.5 preprocessCore_1.52.1 biomaRt_2.46.3 DESeq2_1.30.1 SummarizedExperiment_1.20.0 Biobase_2.50.0
[13] MatrixGenerics_1.2.1 matrixStats_0.58.0 GenomicRanges_1.42.0 GenomeInfoDb_1.26.7 IRanges_2.24.1 S4Vectors_0.28.1
[19] BiocGenerics_0.36.1 stringi_1.5.3 shinyWidgets_0.6.0 shinycssloaders_1.0.0 bslib_0.2.4 rsconnect_0.8.17
[25] shiny_1.6.0
loaded via a namespace (and not attached):
[1] fs_1.5.0 bitops_1.0-6 bit64_4.0.5 progress_1.2.2 httr_1.4.2 tools_4.0.5 utf8_1.2.1
[8] R6_2.5.0 DBI_1.1.1 colorspace_2.0-0 withr_2.4.2 tidyselect_1.1.0 prettyunits_1.1.1 bit_4.0.4
[15] curl_4.3 compiler_4.0.5 xml2_1.3.2 DelayedArray_0.16.3 labeling_0.4.2 sass_0.3.1 scales_1.1.1
[22] genefilter_1.72.1 askpass_1.1 rappdirs_0.3.3 stringr_1.4.0 digest_0.6.27 rmarkdown_2.7 XVector_0.30.0
[29] pkgconfig_2.0.3 htmltools_0.5.1.1 dbplyr_2.1.1 fastmap_1.1.0 rlang_0.4.10 RSQLite_2.2.6 farver_2.1.0
[36] jquerylib_0.1.3 generics_0.1.0 jsonlite_1.7.2 BiocParallel_1.24.1 RCurl_1.98-1.3 magrittr_2.0.1 GenomeInfoDbData_1.2.4
[43] Matrix_1.3-2 Rcpp_1.0.6 munsell_0.5.0 fansi_0.4.2 lifecycle_1.0.0 yaml_2.2.1 zlibbioc_1.36.0
[50] plyr_1.8.6 BiocFileCache_1.14.0 grid_4.0.5 blob_1.2.1 promises_1.2.0.1 crayon_1.4.1 lattice_0.20-41
[57] splines_4.0.5 annotate_1.68.0 hms_1.0.0 locfit_1.5-9.4 knitr_1.32 pillar_1.6.0 geneplotter_1.68.0
[64] XML_3.99-0.6 glue_1.4.2 evaluate_0.14 packrat_0.6.0 BiocManager_1.30.12 vctrs_0.3.7 httpuv_1.5.5
[71] gtable_0.3.0 openssl_1.4.3 purrr_0.3.4 assertthat_0.2.1 cachem_1.0.4 xfun_0.22 mime_0.10
[78] xtable_1.8-4 later_1.1.0.1 survival_3.2-10 tibble_3.1.1 AnnotationDbi_1.52.0 memoise_2.0.0 ellipsis_0.3.1