install.packages("devtools")
I am facing an error that I don't know how to fix. It seems that RStudio cannot lock a directory or something. I tried running
rm -rf ‘/usr/local/Cellar/r/4.0.3_2/lib/R/library/00LOCK-vctrs’
in the Terminal, but it didn't fix the problem.
Expand to see the full log here
> install.packages("devtools")
also installing the dependencies ‘pillar’, ‘vctrs’, ‘credentials’, ‘zip’, ‘lazyeval’, ‘later’, ‘fastmap’, ‘rematch2’, ‘tibble’, ‘gert’, ‘rappdirs’, ‘rex’, ‘crosstalk’, ‘promises’, ‘cachem’, ‘commonmark’, ‘waldo’, ‘usethis’, ‘covr’, ‘DT’, ‘memoise’, ‘roxygen2’, ‘testthat’
trying URL 'https://cran.rstudio.com/src/contrib/pillar_1.4.7.tar.gz'
Content type 'application/x-gzip' length 113345 bytes (110 KB)
==================================================
downloaded 110 KB
trying URL 'https://cran.rstudio.com/src/contrib/vctrs_0.3.6.tar.gz'
Content type 'application/x-gzip' length 778016 bytes (759 KB)
==================================================
downloaded 759 KB
trying URL 'https://cran.rstudio.com/src/contrib/credentials_1.3.0.tar.gz'
Content type 'application/x-gzip' length 230082 bytes (224 KB)
==================================================
downloaded 224 KB
trying URL 'https://cran.rstudio.com/src/contrib/zip_2.1.1.tar.gz'
Content type 'application/x-gzip' length 112865 bytes (110 KB)
==================================================
downloaded 110 KB
trying URL 'https://cran.rstudio.com/src/contrib/lazyeval_0.2.2.tar.gz'
Content type 'application/x-gzip' length 83482 bytes (81 KB)
==================================================
downloaded 81 KB
trying URL 'https://cran.rstudio.com/src/contrib/later_1.1.0.1.tar.gz'
Content type 'application/x-gzip' length 64221 bytes (62 KB)
==================================================
downloaded 62 KB
trying URL 'https://cran.rstudio.com/src/contrib/fastmap_1.1.0.tar.gz'
Content type 'application/x-gzip' length 44277 bytes (43 KB)
==================================================
downloaded 43 KB
trying URL 'https://cran.rstudio.com/src/contrib/rematch2_2.1.2.tar.gz'
Content type 'application/x-gzip' length 13366 bytes (13 KB)
==================================================
downloaded 13 KB
trying URL 'https://cran.rstudio.com/src/contrib/tibble_3.0.6.tar.gz'
Content type 'application/x-gzip' length 681013 bytes (665 KB)
==================================================
downloaded 665 KB
trying URL 'https://cran.rstudio.com/src/contrib/gert_1.2.0.tar.gz'
Content type 'application/x-gzip' length 66100 bytes (64 KB)
==================================================
downloaded 64 KB
trying URL 'https://cran.rstudio.com/src/contrib/rappdirs_0.3.3.tar.gz'
Content type 'application/x-gzip' length 12288 bytes (12 KB)
==================================================
downloaded 12 KB
trying URL 'https://cran.rstudio.com/src/contrib/rex_1.2.0.tar.gz'
Content type 'application/x-gzip' length 91925 bytes (89 KB)
==================================================
downloaded 89 KB
trying URL 'https://cran.rstudio.com/src/contrib/crosstalk_1.1.1.tar.gz'
Content type 'application/x-gzip' length 676543 bytes (660 KB)
==================================================
downloaded 660 KB
trying URL 'https://cran.rstudio.com/src/contrib/promises_1.2.0.1.tar.gz'
Content type 'application/x-gzip' length 3120504 bytes (3.0 MB)
==================================================
downloaded 3.0 MB
trying URL 'https://cran.rstudio.com/src/contrib/cachem_1.0.4.tar.gz'
Content type 'application/x-gzip' length 24493 bytes (23 KB)
==================================================
downloaded 23 KB
trying URL 'https://cran.rstudio.com/src/contrib/commonmark_1.7.tar.gz'
Content type 'application/x-gzip' length 134002 bytes (130 KB)
==================================================
downloaded 130 KB
trying URL 'https://cran.rstudio.com/src/contrib/waldo_0.2.4.tar.gz'
Content type 'application/x-gzip' length 26226 bytes (25 KB)
==================================================
downloaded 25 KB
trying URL 'https://cran.rstudio.com/src/contrib/usethis_2.0.1.tar.gz'
Content type 'application/x-gzip' length 306090 bytes (298 KB)
==================================================
downloaded 298 KB
trying URL 'https://cran.rstudio.com/src/contrib/covr_3.5.1.tar.gz'
Content type 'application/x-gzip' length 146686 bytes (143 KB)
==================================================
downloaded 143 KB
trying URL 'https://cran.rstudio.com/src/contrib/DT_0.17.tar.gz'
Content type 'application/x-gzip' length 1583156 bytes (1.5 MB)
==================================================
downloaded 1.5 MB
trying URL 'https://cran.rstudio.com/src/contrib/memoise_2.0.0.tar.gz'
Content type 'application/x-gzip' length 17337 bytes (16 KB)
==================================================
downloaded 16 KB
trying URL 'https://cran.rstudio.com/src/contrib/roxygen2_7.1.1.tar.gz'
Content type 'application/x-gzip' length 254118 bytes (248 KB)
==================================================
downloaded 248 KB
trying URL 'https://cran.rstudio.com/src/contrib/testthat_3.0.2.tar.gz'
Content type 'application/x-gzip' length 680365 bytes (664 KB)
==================================================
downloaded 664 KB
trying URL 'https://cran.rstudio.com/src/contrib/devtools_2.3.2.tar.gz'
Content type 'application/x-gzip' length 373387 bytes (364 KB)
==================================================
downloaded 364 KB
ERROR: failed to lock directory ‘/usr/local/Cellar/r/4.0.3_2/lib/R/library’ for modifying
Try removing ‘/usr/local/Cellar/r/4.0.3_2/lib/R/library/00LOCK-vctrs’
Warning in install.packages :
installation of package ‘vctrs’ had non-zero exit status
* installing *source* package ‘credentials’ ...
** package ‘credentials’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
Error: package or namespace load failed for ‘credentials’:
.onLoad failed in loadNamespace() for 'credentials', details:
call: NULL
error: Failed to call 'git help -a'
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/usr/local/Cellar/r/4.0.3_2/lib/R/library/credentials’
Warning in install.packages :
installation of package ‘credentials’ had non-zero exit status
* installing *source* package ‘zip’ ...
** package ‘zip’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
ERROR: compilation failed for package ‘zip’
* removing ‘/usr/local/Cellar/r/4.0.3_2/lib/R/library/zip’
Warning in install.packages :
installation of package ‘zip’ had non-zero exit status
* installing *source* package ‘lazyeval’ ...
** package ‘lazyeval’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
ERROR: compilation failed for package ‘lazyeval’
* removing ‘/usr/local/Cellar/r/4.0.3_2/lib/R/library/lazyeval’
Warning in install.packages :
installation of package ‘lazyeval’ had non-zero exit status
* installing *source* package ‘later’ ...
** package ‘later’ successfully unpacked and MD5 sums checked
** using staged installation
Running configure script
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
-latomic linker flag needed.
** libs
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
ERROR: compilation failed for package ‘later’
* removing ‘/usr/local/Cellar/r/4.0.3_2/lib/R/library/later’
Warning in install.packages :
installation of package ‘later’ had non-zero exit status
* installing *source* package ‘fastmap’ ...
** package ‘fastmap’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
ERROR: compilation failed for package ‘fastmap’
* removing ‘/usr/local/Cellar/r/4.0.3_2/lib/R/library/fastmap’
Warning in install.packages :
installation of package ‘fastmap’ had non-zero exit status
* installing *source* package ‘rappdirs’ ...
** package ‘rappdirs’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
ERROR: compilation failed for package ‘rappdirs’
* removing ‘/usr/local/Cellar/r/4.0.3_2/lib/R/library/rappdirs’
Warning in install.packages :
installation of package ‘rappdirs’ had non-zero exit status
* installing *source* package ‘commonmark’ ...
** package ‘commonmark’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
ERROR: compilation failed for package ‘commonmark’
* removing ‘/usr/local/Cellar/r/4.0.3_2/lib/R/library/commonmark’
Warning in install.packages :
installation of package ‘commonmark’ had non-zero exit status
ERROR: dependency ‘vctrs’ is not available for package ‘pillar’
* removing ‘/usr/local/Cellar/r/4.0.3_2/lib/R/library/pillar’
Warning in install.packages :
installation of package ‘pillar’ had non-zero exit status
ERROR: dependencies ‘credentials’, ‘zip’ are not available for package ‘gert’
* removing ‘/usr/local/Cellar/r/4.0.3_2/lib/R/library/gert’
Warning in install.packages :
installation of package ‘gert’ had non-zero exit status
ERROR: dependency ‘lazyeval’ is not available for package ‘rex’
* removing ‘/usr/local/Cellar/r/4.0.3_2/lib/R/library/rex’
Warning in install.packages :
installation of package ‘rex’ had non-zero exit status
ERROR: dependency ‘lazyeval’ is not available for package ‘crosstalk’
* removing ‘/usr/local/Cellar/r/4.0.3_2/lib/R/library/crosstalk’
Warning in install.packages :
installation of package ‘crosstalk’ had non-zero exit status
ERROR: dependency ‘later’ is not available for package ‘promises’
* removing ‘/usr/local/Cellar/r/4.0.3_2/lib/R/library/promises’
Warning in install.packages :
installation of package ‘promises’ had non-zero exit status
ERROR: dependency ‘fastmap’ is not available for package ‘cachem’
* removing ‘/usr/local/Cellar/r/4.0.3_2/lib/R/library/cachem’
Warning in install.packages :
installation of package ‘cachem’ had non-zero exit status
ERROR: dependency ‘commonmark’ is not available for package ‘roxygen2’
* removing ‘/usr/local/Cellar/r/4.0.3_2/lib/R/library/roxygen2’
Warning in install.packages :
installation of package ‘roxygen2’ had non-zero exit status
ERROR: dependencies ‘pillar’, ‘vctrs’ are not available for package ‘tibble’
* removing ‘/usr/local/Cellar/r/4.0.3_2/lib/R/library/tibble’
Warning in install.packages :
installation of package ‘tibble’ had non-zero exit status
ERROR: dependencies ‘gert’, ‘rappdirs’ are not available for package ‘usethis’
* removing ‘/usr/local/Cellar/r/4.0.3_2/lib/R/library/usethis’
Warning in install.packages :
installation of package ‘usethis’ had non-zero exit status
ERROR: dependency ‘rex’ is not available for package ‘covr’
* removing ‘/usr/local/Cellar/r/4.0.3_2/lib/R/library/covr’
Warning in install.packages :
installation of package ‘covr’ had non-zero exit status
ERROR: dependencies ‘crosstalk’, ‘promises’ are not available for package ‘DT’
* removing ‘/usr/local/Cellar/r/4.0.3_2/lib/R/library/DT’
Warning in install.packages :
installation of package ‘DT’ had non-zero exit status
ERROR: dependency ‘cachem’ is not available for package ‘memoise’
* removing ‘/usr/local/Cellar/r/4.0.3_2/lib/R/library/memoise’
Warning in install.packages :
installation of package ‘memoise’ had non-zero exit status
ERROR: dependency ‘tibble’ is not available for package ‘rematch2’
* removing ‘/usr/local/Cellar/r/4.0.3_2/lib/R/library/rematch2’
Warning in install.packages :
installation of package ‘rematch2’ had non-zero exit status
ERROR: dependencies ‘rematch2’, ‘tibble’ are not available for package ‘waldo’
* removing ‘/usr/local/Cellar/r/4.0.3_2/lib/R/library/waldo’
Warning in install.packages :
installation of package ‘waldo’ had non-zero exit status
ERROR: dependency ‘waldo’ is not available for package ‘testthat’
* removing ‘/usr/local/Cellar/r/4.0.3_2/lib/R/library/testthat’
Warning in install.packages :
installation of package ‘testthat’ had non-zero exit status
ERROR: dependencies ‘usethis’, ‘covr’, ‘DT’, ‘memoise’, ‘roxygen2’, ‘testthat’ are not available for package ‘devtools’
* removing ‘/usr/local/Cellar/r/4.0.3_2/lib/R/library/devtools’
Warning in install.packages :
installation of package ‘devtools’ had non-zero exit status
The downloaded source packages are in
‘/private/var/folders/zp/47lcfy9x6kv78k2ylj05vynr0000gn/T/RtmpcXB5H8/downloaded_packages’
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done
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