Error in if (xi > xj) 1L else -1L : missing value where TRUE/FALSE needed In addition: Warning message: In Ops.factor(xi, xj) : ‘>’ not meaningful for factors

General
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I have a template of Machine learning code that write a script in other file and run it , when run cm table gets this error. how to fit it?
this code in the main template works true!!

In addition: Warning message:
In Ops.factor(xi, xj) : ‘>’ not meaningful for factors
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