Error: LaTeX failed to compile 02-analysis-jw.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips.

Hi,
I'm trying to compile a large Rmd file to PDF and get the error above. The log output is below. Does this look like a memory issue? I'm able to compile an html file but the tables have a bunch of unwanted html characters as well.

Thanks in advance!

This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022) (preloaded format=pdflatex 2022.9.1)  19 JAN 2023 13:30

Package graphics Info: Driver file: pdftex.def on input line 107.
)
\Gin@req@height=\dimen161
\Gin@req@width=\dimen162
) (/usr/local/texlive/2022/texmf-dist/tex/latex/booktabs/booktabs.sty
Package: booktabs 2020/01/12 v1.61803398 Publication quality tables
\heavyrulewidth=\dimen163
\lightrulewidth=\dimen164
\cmidrulewidth=\dimen165
\belowrulesep=\dimen166
\belowbottomsep=\dimen167
\aboverulesep=\dimen168
\abovetopsep=\dimen169
\cmidrulesep=\dimen170
\cmidrulekern=\dimen171
\defaultaddspace=\dimen172
\@cmidla=\count280
\@cmidlb=\count281
\@aboverulesep=\dimen173
\@belowrulesep=\dimen174
\@thisruleclass=\count282
\@lastruleclass=\count283
\@thisrulewidth=\dimen175
) (/usr/local/texlive/2022/texmf-dist/tex/latex/tools/longtable.sty
Package: longtable 2021-09-01 v4.17 Multi-page Table package (DPC)
\LTleft=\skip54
\LTright=\skip55
\LTpre=\skip56
\LTpost=\skip57
\LTchunksize=\count284
\LTcapwidth=\dimen176
\LT@head=\box54
\LT@firsthead=\box55
\LT@foot=\box56
\LT@lastfoot=\box57
\LT@gbox=\box58
\LT@cols=\count285
\LT@rows=\count286
\c@LT@tables=\count287
\c@LT@chunks=\count288
\LT@p@ftn=\toks26
) (/usr/local/texlive/2022/texmf-dist/tex/latex/tools/array.sty
Package: array 2021/10/04 v2.5f Tabular extension package (FMi)
\col@sep=\dimen177
\ar@mcellbox=\box59
\extrarowheight=\dimen178
\NC@list=\toks27
\extratabsurround=\skip58
\backup@length=\skip59
\ar@cellbox=\box60
) (/usr/local/texlive/2022/texmf-dist/tex/latex/multirow/multirow.sty
Package: multirow 2021/03/15 v2.8 Span multiple rows of a table
\multirow@colwidth=\skip60
\multirow@cntb=\count289
\multirow@dima=\skip61
\bigstrutjot=\dimen179
) (/usr/local/texlive/2022/texmf-dist/tex/latex/wrapfig/wrapfig.sty
\wrapoverhang=\dimen180
\WF@size=\dimen181
\c@WF@wrappedlines=\count290
\WF@box=\box61
\WF@everypar=\toks28
Package: wrapfig 2003/01/31  v 3.6
) (/usr/local/texlive/2022/texmf-dist/tex/latex/float/float.sty
Package: float 2001/11/08 v1.3d Float enhancements (AL)
\c@float@type=\count291
\float@exts=\toks29
\float@box=\box62
\@float@everytoks=\toks30
\@floatcapt=\box63
) (/usr/local/texlive/2022/texmf-dist/tex/latex/colortbl/colortbl.sty
Package: colortbl 2020/01/04 v1.0e Color table columns (DPC)
\everycr=\toks31
\minrowclearance=\skip62
) (/usr/local/texlive/2022/texmf-dist/tex/latex/pdflscape/pdflscape.sty
Package: pdflscape 2019/12/05 v0.12 Display of landscape pages in PDF (HO)
(/usr/local/texlive/2022/texmf-dist/tex/latex/graphics/lscape.sty
Package: lscape 2020/05/28 v3.02 Landscape Pages (DPC)
)
Package pdflscape Info: Auto-detected driver: pdftex on input line 81.
) (/usr/local/texlive/2022/texmf-dist/tex/latex/tabu/tabu.sty
Package: tabu 2019/01/11 v2.9 - flexible LaTeX tabulars (FC+tabu-fixed)
(/usr/local/texlive/2022/texmf-dist/tex/latex/varwidth/varwidth.sty
Package: varwidth 2009/03/30 ver 0.92;  Variable-width minipages
\@vwid@box=\box64
\sift@deathcycles=\count292
\@vwid@loff=\dimen182
\@vwid@roff=\dimen183
)
\c@taburow=\count293
\tabu@nbcols=\count294
\tabu@cnt=\count295
\tabu@Xcol=\count296
\tabu@alloc=\count297
\tabu@nested=\count298
\tabu@target=\dimen184
\tabu@spreadtarget=\dimen185
\tabu@naturalX=\dimen186
\tabucolX=\dimen187
\tabu@Xsum=\dimen188
\extrarowdepth=\dimen189
\abovetabulinesep=\dimen190
\belowtabulinesep=\dimen191
\tabustrutrule=\dimen192
\tabu@thebody=\toks32
\tabu@footnotes=\toks33
\tabu@box=\box65
\tabu@arstrutbox=\box66
\tabu@hleads=\box67
\tabu@vleads=\box68
\tabu@cellskip=\skip63
)
(/usr/local/texlive/2022/texmf-dist/tex/latex/threeparttable/threeparttable.sty
Package: threeparttable 2003/06/13  v 3.0
\@tempboxb=\box69
)
(/usr/local/texlive/2022/texmf-dist/tex/latex/threeparttablex/threeparttablex.s
ty
Package: threeparttablex 2013/07/23 v0.3 by daleif
(/usr/local/texlive/2022/texmf-dist/tex/latex/environ/environ.sty
Package: environ 2014/05/04 v0.3 A new way to define environments
(/usr/local/texlive/2022/texmf-dist/tex/latex/trimspaces/trimspaces.sty
Package: trimspaces 2009/09/17 v1.1 Trim spaces around a token list
))
\TPTL@width=\skip64
) (/usr/local/texlive/2022/texmf-dist/tex/generic/ulem/ulem.sty
\UL@box=\box70
\UL@hyphenbox=\box71
\UL@skip=\skip65
\UL@hook=\toks34
\UL@height=\dimen193
\UL@pe=\count299
\UL@pixel=\dimen194
\ULC@box=\box72
Package: ulem 2019/11/18
\ULdepth=\dimen195
) (/usr/local/texlive/2022/texmf-dist/tex/latex/makecell/makecell.sty
Package: makecell 2009/08/03 V0.1e Managing of Tab Column Heads and Cells
\rotheadsize=\dimen196
\c@nlinenum=\count300
\TeXr@lab=\toks35
) (/usr/local/texlive/2022/texmf-dist/tex/latex/bookmark/bookmark.sty
Package: bookmark 2020-11-06 v1.29 PDF bookmarks (HO)
(/usr/local/texlive/2022/texmf-dist/tex/latex/hyperref/hyperref.sty
Package: hyperref 2022-02-21 v7.00n Hypertext links for LaTeX
(/usr/local/texlive/2022/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
Package: pdftexcmds 2020-06-27 v0.33 Utility functions of pdfTeX for LuaTeX (HO
)
(/usr/local/texlive/2022/texmf-dist/tex/generic/infwarerr/infwarerr.sty
Package: infwarerr 2019/12/03 v1.5 Providing info/warning/error messages (HO)
)
Package pdftexcmds Info: \pdf@primitive is available.
Package pdftexcmds Info: \pdf@ifprimitive is available.
Package pdftexcmds Info: \pdfdraftmode found.
) (/usr/local/texlive/2022/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty
Package: kvdefinekeys 2019-12-19 v1.6 Define keys (HO)
) (/usr/local/texlive/2022/texmf-dist/tex/generic/pdfescape/pdfescape.sty
Package: pdfescape 2019/12/09 v1.15 Implements pdfTeX's escape features (HO)
) (/usr/local/texlive/2022/texmf-dist/tex/latex/hycolor/hycolor.sty
Package: hycolor 2020-01-27 v1.10 Color options for hyperref/bookmark (HO)
) (/usr/local/texlive/2022/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty
Package: letltxmacro 2019/12/03 v1.6 Let assignment for LaTeX macros (HO)
) (/usr/local/texlive/2022/texmf-dist/tex/latex/auxhook/auxhook.sty
Package: auxhook 2019-12-17 v1.6 Hooks for auxiliary files (HO)
)
\@linkdim=\dimen197
\Hy@linkcounter=\count301
\Hy@pagecounter=\count302
(/usr/local/texlive/2022/texmf-dist/tex/latex/hyperref/pd1enc.def
File: pd1enc.def 2022-02-21 v7.00n Hyperref: PDFDocEncoding definition (HO)
Now handling font encoding PD1 ...
... no UTF-8 mapping file for font encoding PD1
) (/usr/local/texlive/2022/texmf-dist/tex/generic/intcalc/intcalc.sty
Package: intcalc 2019/12/15 v1.3 Expandable calculations with integers (HO)
) (/usr/local/texlive/2022/texmf-dist/tex/generic/etexcmds/etexcmds.sty
Package: etexcmds 2019/12/15 v1.7 Avoid name clashes with e-TeX commands (HO)
)
\Hy@SavedSpaceFactor=\count303
(/usr/local/texlive/2022/texmf-dist/tex/latex/hyperref/puenc.def
File: puenc.def 2022-02-21 v7.00n Hyperref: PDF Unicode definition (HO)
Now handling font encoding PU ...
... no UTF-8 mapping file for font encoding PU
)
Package hyperref Info: Option `unicode' set `true' on input line 4018.
Package hyperref Info: Hyper figures OFF on input line 4137.
Package hyperref Info: Link nesting OFF on input line 4142.
Package hyperref Info: Hyper index ON on input line 4145.
Package hyperref Info: Plain pages OFF on input line 4152.
Package hyperref Info: Backreferencing OFF on input line 4157.
Package hyperref Info: Implicit mode ON; LaTeX internals redefined.
Package hyperref Info: Bookmarks ON on input line 4390.
\c@Hy@tempcnt=\count304
(/usr/local/texlive/2022/texmf-dist/tex/latex/url/url.sty
\Urlmuskip=\muskip17
Package: url 2013/09/16  ver 3.4  Verb mode for urls, etc.
)
LaTeX Info: Redefining \url on input line 4749.
\XeTeXLinkMargin=\dimen198
(/usr/local/texlive/2022/texmf-dist/tex/generic/bitset/bitset.sty
Package: bitset 2019/12/09 v1.3 Handle bit-vector datatype (HO)
(/usr/local/texlive/2022/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty
Package: bigintcalc 2019/12/15 v1.5 Expandable calculations on big integers (HO
)
))
\Fld@menulength=\count305
\Field@Width=\dimen199
\Fld@charsize=\dimen256
Package hyperref Info: Hyper figures OFF on input line 6027.
Package hyperref Info: Link nesting OFF on input line 6032.
Package hyperref Info: Hyper index ON on input line 6035.
Package hyperref Info: backreferencing OFF on input line 6042.
Package hyperref Info: Link coloring OFF on input line 6047.
Package hyperref Info: Link coloring with OCG OFF on input line 6052.
Package hyperref Info: PDF/A mode OFF on input line 6057.
LaTeX Info: Redefining \ref on input line 6097.
LaTeX Info: Redefining \pageref on input line 6101.
(/usr/local/texlive/2022/texmf-dist/tex/latex/base/atbegshi-ltx.sty
Package: atbegshi-ltx 2021/01/10 v1.0c Emulation of the original atbegshi
package with kernel methods
)
\Hy@abspage=\count306
\c@Item=\count307
\c@Hfootnote=\count308
)
Package hyperref Info: Driver (autodetected): hpdftex.
(/usr/local/texlive/2022/texmf-dist/tex/latex/hyperref/hpdftex.def
File: hpdftex.def 2022-02-21 v7.00n Hyperref driver for pdfTeX
(/usr/local/texlive/2022/texmf-dist/tex/latex/base/atveryend-ltx.sty
Package: atveryend-ltx 2020/08/19 v1.0a Emulation of the original atveryend pac
kage
with kernel methods
)
\Fld@listcount=\count309
\c@bookmark@seq@number=\count310

(/usr/local/texlive/2022/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty
Package: rerunfilecheck 2019/12/05 v1.9 Rerun checks for auxiliary files (HO)

(/usr/local/texlive/2022/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty
Package: uniquecounter 2019/12/15 v1.4 Provide unlimited unique counter (HO)
)
Package uniquecounter Info: New unique counter `rerunfilecheck' on input line 2
86.
)
\Hy@SectionHShift=\skip66
) (/usr/local/texlive/2022/texmf-dist/tex/latex/bookmark/bkm-pdftex.def
File: bkm-pdftex.def 2020-11-06 v1.29 bookmark driver for pdfTeX (HO)
\BKM@id=\count311
)) (/usr/local/texlive/2022/texmf-dist/tex/latex/xurl/xurl.sty
Package: xurl 2022/01/09 v 0.10 modify URL breaks
) (/usr/local/texlive/2022/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def
File: l3backend-pdftex.def 2022-02-07 L3 backend support: PDF output (pdfTeX)
\l__color_backend_stack_int=\count312
\l__pdf_internal_box=\box73
)
No file 02-analysis-jw.aux.
\openout1 = `02-analysis-jw.aux'.

LaTeX Font Info:    Checking defaults for OML/cmm/m/it on input line 123.
LaTeX Font Info:    ... okay on input line 123.
LaTeX Font Info:    Checking defaults for OMS/cmsy/m/n on input line 123.
LaTeX Font Info:    ... okay on input line 123.
LaTeX Font Info:    Checking defaults for OT1/cmr/m/n on input line 123.
LaTeX Font Info:    ... okay on input line 123.
LaTeX Font Info:    Checking defaults for T1/cmr/m/n on input line 123.
LaTeX Font Info:    ... okay on input line 123.
LaTeX Font Info:    Checking defaults for TS1/cmr/m/n on input line 123.
LaTeX Font Info:    ... okay on input line 123.
LaTeX Font Info:    Checking defaults for OMX/cmex/m/n on input line 123.
LaTeX Font Info:    ... okay on input line 123.
LaTeX Font Info:    Checking defaults for U/cmr/m/n on input line 123.
LaTeX Font Info:    ... okay on input line 123.
LaTeX Font Info:    Checking defaults for PD1/pdf/m/n on input line 123.
LaTeX Font Info:    ... okay on input line 123.
LaTeX Font Info:    Checking defaults for PU/pdf/m/n on input line 123.
LaTeX Font Info:    ... okay on input line 123.
LaTeX Info: Redefining \microtypecontext on input line 123.
Package microtype Info: Applying patch `item' on input line 123.
Package microtype Info: Applying patch `toc' on input line 123.
Package microtype Info: Applying patch `eqnum' on input line 123.
Package microtype Info: Applying patch `footnote' on input line 123.
Package microtype Info: Generating PDF output.
Package microtype Info: Character protrusion enabled (level 2).
Package microtype Info: Using protrusion set `basicmath'.
Package microtype Info: Automatic font expansion enabled (level 2),
(microtype)             stretch: 20, shrink: 20, step: 1, non-selected.
Package microtype Info: Using default expansion set `alltext-nott'.
LaTeX Info: Redefining \showhyphens on input line 123.
Package microtype Info: No adjustment of tracking.
Package microtype Info: No adjustment of interword spacing.
Package microtype Info: No adjustment of character kerning.
(/usr/local/texlive/2022/texmf-dist/tex/latex/microtype/mt-cmr.cfg
File: mt-cmr.cfg 2013/05/19 v2.2 microtype config. file: Computer Modern Roman 
(RS)
) (/usr/local/texlive/2022/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
\scratchcounter=\count313
\scratchdimen=\dimen257
\scratchbox=\box74
\nofMPsegments=\count314
\nofMParguments=\count315
\everyMPshowfont=\toks36
\MPscratchCnt=\count316
\MPscratchDim=\dimen258
\MPnumerator=\count317
\makeMPintoPDFobject=\count318
\everyMPtoPDFconversion=\toks37
) (/usr/local/texlive/2022/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty
Package: epstopdf-base 2020-01-24 v2.11 Base part for package epstopdf
Package epstopdf-base Info: Redefining graphics rule for `.eps' on input line 4
85.
(/usr/local/texlive/2022/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg
File: epstopdf-sys.cfg 2010/07/13 v1.3 Configuration of (r)epstopdf for TeX Liv
e
))
*geometry* driver: auto-detecting
*geometry* detected driver: pdftex
*geometry* verbose mode - [ preamble ] result:
* driver: pdftex
* paper: <default>
* layout: <same size as paper>
* layoutoffset:(h,v)=(0.0pt,0.0pt)
* modes: 
* h-part:(L,W,R)=(72.26999pt, 469.75502pt, 72.26999pt)
* v-part:(T,H,B)=(72.26999pt, 650.43001pt, 72.26999pt)
* \paperwidth=614.295pt
* \paperheight=794.96999pt
* \textwidth=469.75502pt
* \textheight=650.43001pt
* \oddsidemargin=0.0pt
* \evensidemargin=0.0pt
* \topmargin=-37.0pt
* \headheight=12.0pt
* \headsep=25.0pt
* \topskip=10.0pt
* \footskip=30.0pt
* \marginparwidth=65.0pt
* \marginparsep=11.0pt
* \columnsep=10.0pt
* \skip\footins=9.0pt plus 4.0pt minus 2.0pt
* \hoffset=0.0pt
* \voffset=0.0pt
* \mag=1000
* \@twocolumnfalse
* \@twosidefalse
* \@mparswitchfalse
* \@reversemarginfalse
* (1in=72.27pt=25.4mm, 1cm=28.453pt)

Package hyperref Info: Link coloring OFF on input line 123.
(/usr/local/texlive/2022/texmf-dist/tex/latex/hyperref/nameref.sty
Package: nameref 2021-04-02 v2.47 Cross-referencing by name of section
(/usr/local/texlive/2022/texmf-dist/tex/latex/refcount/refcount.sty
Package: refcount 2019/12/15 v3.6 Data extraction from label references (HO)
)
(/usr/local/texlive/2022/texmf-dist/tex/generic/gettitlestring/gettitlestring.s
ty
Package: gettitlestring 2019/12/15 v1.6 Cleanup title references (HO)
)
\c@section@level=\count319
)
LaTeX Info: Redefining \ref on input line 123.
LaTeX Info: Redefining \pageref on input line 123.
LaTeX Info: Redefining \nameref on input line 123.
LaTeX Font Info:    Trying to load font information for OT1+lmr on input line 1
25.
(/usr/local/texlive/2022/texmf-dist/tex/latex/lm/ot1lmr.fd
File: ot1lmr.fd 2015/05/01 v1.6.1 Font defs for Latin Modern
)
LaTeX Font Info:    Trying to load font information for OML+lmm on input line 1
25.
(/usr/local/texlive/2022/texmf-dist/tex/latex/lm/omllmm.fd
File: omllmm.fd 2015/05/01 v1.6.1 Font defs for Latin Modern
)
LaTeX Font Info:    Trying to load font information for OMS+lmsy on input line 
125.
(/usr/local/texlive/2022/texmf-dist/tex/latex/lm/omslmsy.fd
File: omslmsy.fd 2015/05/01 v1.6.1 Font defs for Latin Modern
)
LaTeX Font Info:    Trying to load font information for OMX+lmex on input line 
125.
(/usr/local/texlive/2022/texmf-dist/tex/latex/lm/omxlmex.fd
File: omxlmex.fd 2015/05/01 v1.6.1 Font defs for Latin Modern
)
LaTeX Font Info:    External font `lmex10' loaded for size
(Font)              <12> on input line 125.
LaTeX Font Info:    External font `lmex10' loaded for size
(Font)              <8> on input line 125.
LaTeX Font Info:    External font `lmex10' loaded for size
(Font)              <6> on input line 125.
LaTeX Font Info:    Trying to load font information for U+msa on input line 125
.
(/usr/local/texlive/2022/texmf-dist/tex/latex/amsfonts/umsa.fd
File: umsa.fd 2013/01/14 v3.01 AMS symbols A
) (/usr/local/texlive/2022/texmf-dist/tex/latex/microtype/mt-msa.cfg
File: mt-msa.cfg 2006/02/04 v1.1 microtype config. file: AMS symbols (a) (RS)
)
LaTeX Font Info:    Trying to load font information for U+msb on input line 125
.
(/usr/local/texlive/2022/texmf-dist/tex/latex/amsfonts/umsb.fd
File: umsb.fd 2013/01/14 v3.01 AMS symbols B
) (/usr/local/texlive/2022/texmf-dist/tex/latex/microtype/mt-msb.cfg
File: mt-msb.cfg 2005/06/01 v1.0 microtype config. file: AMS symbols (b) (RS)
)
LaTeX Font Info:    External font `lmex10' loaded for size
(Font)              <10> on input line 130.
LaTeX Font Info:    External font `lmex10' loaded for size
(Font)              <7> on input line 130.
LaTeX Font Info:    External font `lmex10' loaded for size
(Font)              <5> on input line 130.

Overfull \hbox (73.29648pt too wide) in paragraph at lines 130--291
[] 
 []

[1

{/usr/local/texlive/2022/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]
Overfull \vbox (344.36105pt too high) has occurred while \output is active []

[2]
<02-analysis-jw_files/figure-latex/unnamed-chunk-6-1.pdf, id=19, 459.7175pt x 3
13.17pt>
File: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-1.pdf Graphic file (typ
e pdf)
<use 02-analysis-jw_files/figure-latex/unnamed-chunk-6-1.pdf>
Package pdftex.def Info: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-1.pd
f  used on input line 371.
(pdftex.def)             Requested size: 459.7304pt x 313.17877pt.
[3]
<02-analysis-jw_files/figure-latex/unnamed-chunk-6-2.pdf, id=26, 413.545pt x 31
4.17375pt>
File: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-2.pdf Graphic file (typ
e pdf)
<use 02-analysis-jw_files/figure-latex/unnamed-chunk-6-2.pdf>
Package pdftex.def Info: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-2.pd
f  used on input line 377.
(pdftex.def)             Requested size: 413.5566pt x 314.18256pt.
[4 <./02-analysis-jw_files/figure-latex/unnamed-chunk-6-1.pdf>]
Overfull \hbox (73.29648pt too wide) in paragraph at lines 383--544
[] 
 []

[5 <./02-analysis-jw_files/figure-latex/unnamed-chunk-6-2.pdf>]
Overfull \vbox (342.02774pt too high) has occurred while \output is active []

[6]
<02-analysis-jw_files/figure-latex/unnamed-chunk-6-3.pdf, id=63, 459.7175pt x 3
13.17pt>
File: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-3.pdf Graphic file (typ
e pdf)
<use 02-analysis-jw_files/figure-latex/unnamed-chunk-6-3.pdf>
Package pdftex.def Info: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-3.pd
f  used on input line 624.
(pdftex.def)             Requested size: 459.7304pt x 313.17877pt.
[7]
<02-analysis-jw_files/figure-latex/unnamed-chunk-6-4.pdf, id=71, 413.545pt x 31
4.17375pt>
File: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-4.pdf Graphic file (typ
e pdf)
<use 02-analysis-jw_files/figure-latex/unnamed-chunk-6-4.pdf>
Package pdftex.def Info: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-4.pd
f  used on input line 630.
(pdftex.def)             Requested size: 413.5566pt x 314.18256pt.
[8 <./02-analysis-jw_files/figure-latex/unnamed-chunk-6-3.pdf>]
Overfull \hbox (73.29648pt too wide) in paragraph at lines 636--797
[] 
 []

[9 <./02-analysis-jw_files/figure-latex/unnamed-chunk-6-4.pdf>]
Overfull \vbox (342.02774pt too high) has occurred while \output is active []

[10]
<02-analysis-jw_files/figure-latex/unnamed-chunk-6-5.pdf, id=108, 459.7175pt x 
313.17pt>
File: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-5.pdf Graphic file (typ
e pdf)
<use 02-analysis-jw_files/figure-latex/unnamed-chunk-6-5.pdf>
Package pdftex.def Info: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-5.pd
f  used on input line 877.
(pdftex.def)             Requested size: 459.7304pt x 313.17877pt.
[11]
<02-analysis-jw_files/figure-latex/unnamed-chunk-6-6.pdf, id=115, 413.545pt x 3
14.17375pt>
File: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-6.pdf Graphic file (typ
e pdf)
<use 02-analysis-jw_files/figure-latex/unnamed-chunk-6-6.pdf>
Package pdftex.def Info: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-6.pd
f  used on input line 883.
(pdftex.def)             Requested size: 413.5566pt x 314.18256pt.
[12 <./02-analysis-jw_files/figure-latex/unnamed-chunk-6-5.pdf>]
Overfull \hbox (73.29648pt too wide) in paragraph at lines 889--1050
[] 
 []

[13 <./02-analysis-jw_files/figure-latex/unnamed-chunk-6-6.pdf>]
Overfull \vbox (342.02774pt too high) has occurred while \output is active []

[14]
<02-analysis-jw_files/figure-latex/unnamed-chunk-6-7.pdf, id=154, 459.7175pt x 
313.17pt>
File: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-7.pdf Graphic file (typ
e pdf)
<use 02-analysis-jw_files/figure-latex/unnamed-chunk-6-7.pdf>
Package pdftex.def Info: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-7.pd
f  used on input line 1130.
(pdftex.def)             Requested size: 459.7304pt x 313.17877pt.
[15]
<02-analysis-jw_files/figure-latex/unnamed-chunk-6-8.pdf, id=161, 413.545pt x 3
14.17375pt>
File: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-8.pdf Graphic file (typ
e pdf)
<use 02-analysis-jw_files/figure-latex/unnamed-chunk-6-8.pdf>
Package pdftex.def Info: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-8.pd
f  used on input line 1136.
(pdftex.def)             Requested size: 413.5566pt x 314.18256pt.
[16 <./02-analysis-jw_files/figure-latex/unnamed-chunk-6-7.pdf>]
Overfull \hbox (100.69647pt too wide) in paragraph at lines 1142--1299
[] 
 []

[17 <./02-analysis-jw_files/figure-latex/unnamed-chunk-6-8.pdf>]
Overfull \vbox (317.22775pt too high) has occurred while \output is active []

[18]
<02-analysis-jw_files/figure-latex/unnamed-chunk-6-9.pdf, id=198, 413.545pt x 3
14.17375pt>
File: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-9.pdf Graphic file (typ
e pdf)
<use 02-analysis-jw_files/figure-latex/unnamed-chunk-6-9.pdf>
Package pdftex.def Info: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-9.pd
f  used on input line 1357.
(pdftex.def)             Requested size: 413.5566pt x 314.18256pt.

Overfull \hbox (73.29648pt too wide) in paragraph at lines 1363--1524
[] 
 []

[19 <./02-analysis-jw_files/figure-latex/unnamed-chunk-6-9.pdf>]
Overfull \vbox (342.02774pt too high) has occurred while \output is active []

[20]
<02-analysis-jw_files/figure-latex/unnamed-chunk-6-10.pdf, id=222, 459.7175pt x
 313.17pt>
File: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-10.pdf Graphic file (ty
pe pdf)
<use 02-analysis-jw_files/figure-latex/unnamed-chunk-6-10.pdf>
Package pdftex.def Info: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-10.p
df  used on input line 1604.
(pdftex.def)             Requested size: 459.7304pt x 313.17877pt.
[21]
<02-analysis-jw_files/figure-latex/unnamed-chunk-6-11.pdf, id=229, 413.545pt x 
314.17375pt>
File: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-11.pdf Graphic file (ty
pe pdf)
<use 02-analysis-jw_files/figure-latex/unnamed-chunk-6-11.pdf>
Package pdftex.def Info: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-11.p
df  used on input line 1610.
(pdftex.def)             Requested size: 413.5566pt x 314.18256pt.
[22 <./02-analysis-jw_files/figure-latex/unnamed-chunk-6-10.pdf>]
Overfull \hbox (73.29648pt too wide) in paragraph at lines 1616--1775
[] 
 []

[23 <./02-analysis-jw_files/figure-latex/unnamed-chunk-6-11.pdf>]
Overfull \vbox (329.62775pt too high) has occurred while \output is active []

[24]
<02-analysis-jw_files/figure-latex/unnamed-chunk-6-12.pdf, id=266, 459.7175pt x
 313.17pt>
File: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-12.pdf Graphic file (ty
pe pdf)
<use 02-analysis-jw_files/figure-latex/unnamed-chunk-6-12.pdf>
Package pdftex.def Info: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-12.p
df  used on input line 1855.
(pdftex.def)             Requested size: 459.7304pt x 313.17877pt.
[25]
<02-analysis-jw_files/figure-latex/unnamed-chunk-6-13.pdf, id=275, 414.54875pt 
x 314.17375pt>
File: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-13.pdf Graphic file (ty
pe pdf)
<use 02-analysis-jw_files/figure-latex/unnamed-chunk-6-13.pdf>
Package pdftex.def Info: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-13.p
df  used on input line 1861.
(pdftex.def)             Requested size: 414.56038pt x 314.18256pt.
[26 <./02-analysis-jw_files/figure-latex/unnamed-chunk-6-12.pdf>]
Overfull \hbox (73.29648pt too wide) in paragraph at lines 1867--2026
[] 
 []

[27 <./02-analysis-jw_files/figure-latex/unnamed-chunk-6-13.pdf>]
Overfull \vbox (329.62775pt too high) has occurred while \output is active []

[28]
<02-analysis-jw_files/figure-latex/unnamed-chunk-6-14.pdf, id=312, 459.7175pt x
 313.17pt>
File: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-14.pdf Graphic file (ty
pe pdf)
<use 02-analysis-jw_files/figure-latex/unnamed-chunk-6-14.pdf>
Package pdftex.def Info: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-14.p
df  used on input line 2106.
(pdftex.def)             Requested size: 459.7304pt x 313.17877pt.
[29]
<02-analysis-jw_files/figure-latex/unnamed-chunk-6-15.pdf, id=319, 413.545pt x 
314.17375pt>
File: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-15.pdf Graphic file (ty
pe pdf)
<use 02-analysis-jw_files/figure-latex/unnamed-chunk-6-15.pdf>
Package pdftex.def Info: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-15.p
df  used on input line 2112.
(pdftex.def)             Requested size: 413.5566pt x 314.18256pt.
[30 <./02-analysis-jw_files/figure-latex/unnamed-chunk-6-14.pdf>]
Overfull \hbox (73.29648pt too wide) in paragraph at lines 2118--2279
[] 
 []

[31 <./02-analysis-jw_files/figure-latex/unnamed-chunk-6-15.pdf>]
Overfull \vbox (342.02774pt too high) has occurred while \output is active []

[32]
<02-analysis-jw_files/figure-latex/unnamed-chunk-6-16.pdf, id=357, 459.7175pt x
 313.17pt>
File: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-16.pdf Graphic file (ty
pe pdf)
<use 02-analysis-jw_files/figure-latex/unnamed-chunk-6-16.pdf>
Package pdftex.def Info: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-16.p
df  used on input line 2359.
(pdftex.def)             Requested size: 459.7304pt x 313.17877pt.
[33]
<02-analysis-jw_files/figure-latex/unnamed-chunk-6-17.pdf, id=364, 413.545pt x 
314.17375pt>
File: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-17.pdf Graphic file (ty
pe pdf)
<use 02-analysis-jw_files/figure-latex/unnamed-chunk-6-17.pdf>
Package pdftex.def Info: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-17.p
df  used on input line 2365.
(pdftex.def)             Requested size: 413.5566pt x 314.18256pt.
[34 <./02-analysis-jw_files/figure-latex/unnamed-chunk-6-16.pdf>]
Overfull \hbox (73.29648pt too wide) in paragraph at lines 2371--2528
[] 
 []

[35 <./02-analysis-jw_files/figure-latex/unnamed-chunk-6-17.pdf>]
Overfull \vbox (317.22775pt too high) has occurred while \output is active []

[36]
<02-analysis-jw_files/figure-latex/unnamed-chunk-6-18.pdf, id=402, 459.7175pt x
 313.17pt>
File: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-18.pdf Graphic file (ty
pe pdf)
<use 02-analysis-jw_files/figure-latex/unnamed-chunk-6-18.pdf>
Package pdftex.def Info: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-18.p
df  used on input line 2608.
(pdftex.def)             Requested size: 459.7304pt x 313.17877pt.
[37]
<02-analysis-jw_files/figure-latex/unnamed-chunk-6-19.pdf, id=410, 413.545pt x 
314.17375pt>
File: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-19.pdf Graphic file (ty
pe pdf)
<use 02-analysis-jw_files/figure-latex/unnamed-chunk-6-19.pdf>
Package pdftex.def Info: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-19.p
df  used on input line 2614.
(pdftex.def)             Requested size: 413.5566pt x 314.18256pt.
[38 <./02-analysis-jw_files/figure-latex/unnamed-chunk-6-18.pdf>]
Overfull \hbox (73.29648pt too wide) in paragraph at lines 2620--2777
[] 
 []

[39 <./02-analysis-jw_files/figure-latex/unnamed-chunk-6-19.pdf>]
Overfull \vbox (317.22775pt too high) has occurred while \output is active []

[40]
<02-analysis-jw_files/figure-latex/unnamed-chunk-6-20.pdf, id=447, 459.7175pt x
 313.17pt>
File: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-20.pdf Graphic file (ty
pe pdf)
<use 02-analysis-jw_files/figure-latex/unnamed-chunk-6-20.pdf>
Package pdftex.def Info: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-20.p
df  used on input line 2857.
(pdftex.def)             Requested size: 459.7304pt x 313.17877pt.
[41]
<02-analysis-jw_files/figure-latex/unnamed-chunk-6-21.pdf, id=454, 413.545pt x 
314.17375pt>
File: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-21.pdf Graphic file (ty
pe pdf)
<use 02-analysis-jw_files/figure-latex/unnamed-chunk-6-21.pdf>
Package pdftex.def Info: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-21.p
df  used on input line 2863.
(pdftex.def)             Requested size: 413.5566pt x 314.18256pt.
[42 <./02-analysis-jw_files/figure-latex/unnamed-chunk-6-20.pdf>]
Overfull \hbox (73.29648pt too wide) in paragraph at lines 2869--3030
[] 
 []

[43 <./02-analysis-jw_files/figure-latex/unnamed-chunk-6-21.pdf>]
Overfull \vbox (342.02774pt too high) has occurred while \output is active []

[44]
<02-analysis-jw_files/figure-latex/unnamed-chunk-6-22.pdf, id=492, 459.7175pt x
 313.17pt>
File: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-22.pdf Graphic file (ty
pe pdf)
<use 02-analysis-jw_files/figure-latex/unnamed-chunk-6-22.pdf>
Package pdftex.def Info: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-22.p
df  used on input line 3110.
(pdftex.def)             Requested size: 459.7304pt x 313.17877pt.
[45]
<02-analysis-jw_files/figure-latex/unnamed-chunk-6-23.pdf, id=499, 413.545pt x 
314.17375pt>
File: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-23.pdf Graphic file (ty
pe pdf)
<use 02-analysis-jw_files/figure-latex/unnamed-chunk-6-23.pdf>
Package pdftex.def Info: 02-analysis-jw_files/figure-latex/unnamed-chunk-6-23.p
df  used on input line 3116.
(pdftex.def)             Requested size: 413.5566pt x 314.18256pt.
[46 <./02-analysis-jw_files/figure-latex/unnamed-chunk-6-22.pdf>]
LaTeX Font Info:    Trying to load font information for T1+lmtt on input line 3
125.
(/usr/local/texlive/2022/texmf-dist/tex/latex/lm/t1lmtt.fd
File: t1lmtt.fd 2015/05/01 v1.6.1 Font defs for Latin Modern
)
LaTeX Font Info:    Font shape `T1/lmtt/bx/n' in size <10> not available
(Font)              Font shape `T1/lmtt/b/n' tried instead on input line 3127.
[47 <./02-analysis-jw_files/figure-latex/unnamed-chunk-6-23.pdf>]
<02-analysis-jw_files/figure-latex/unnamed-chunk-7-1.pdf, id=536, 449.68pt x 41
8.56375pt>
File: 02-analysis-jw_files/figure-latex/unnamed-chunk-7-1.pdf Graphic file (typ
e pdf)
<use 02-analysis-jw_files/figure-latex/unnamed-chunk-7-1.pdf>
Package pdftex.def Info: 02-analysis-jw_files/figure-latex/unnamed-chunk-7-1.pd
f  used on input line 3164.
(pdftex.def)             Requested size: 449.6789pt x 418.56271pt.
[48 <./02-analysis-jw_files/figure-latex/unnamed-chunk-7-1.pdf>]
! Extra alignment tab has been changed to \cr.
<recently read> \endtemplate 
                             
l.3232 &nbsp;&nbsp;&nbsp;&nbsp;&
                                nbsp;Male &  & 56.60% (4713) & 63.98% (1414)...
 
Here is how much of TeX's memory you used:
 15708 strings out of 478268
 257318 string characters out of 5846348
 603739 words of memory out of 5000000
 33423 multiletter control sequences out of 15000+600000
 514671 words of font info for 93 fonts, out of 8000000 for 9000
 1141 hyphenation exceptions out of 8191
 74i,9n,77p,1011b,372s stack positions out of 10000i,1000n,20000p,200000b,200000s
!  ==> Fatal error occurred, no output PDF file produced!

What is the content of you Rmd file ?

Are you generating HTML tables that would be included in your LaTeX output ?

This topic was automatically closed 45 days after the last reply. New replies are no longer allowed.

If you have a query related to it or one of the replies, start a new topic and refer back with a link.