I was wondering if someone can help me. I am running a linear mixed model analyses using the nlme package. The model runs fine but I cant plot the regression lines from the model using ggplot2. I get the error
Error: $ operator is invalid for atomic vectors
my code is as follows
m1<-lme(vis_hits~Group*session+nbacklevel, random=~session|subjno,
data = sampledata,method="ML",na.action=na.omit)
vi■■■■sdata<-sampledata[-which(is.na(sampledata$vis_hits)),]
vis_hits_plot<-ggplot(vi■■■■sdata,aes(session,vis_hits,colour=Group))+
stat_summary(fun.data=mean_se,geom="pointrange")+
stat_summary(aes(y=fitted(m1),linetype=Group),fun=mean,geom="line")
A sample of my data is below
subjno+A1:E303 | Group | session | nbacklevel | vis_hits |
---|---|---|---|---|
1 | 1 | 1 | 1 | 0.83 |
1 | 1 | 1 | 2 | 0.5 |
1 | 1 | 1 | 3 | 0.33 |
1 | 1 | 1 | 3 | |
1 | 1 | 2 | 1 | 0.67 |
1 | 1 | 2 | 2 | 0.5 |
1 | 1 | 2 | 3 | 0.17 |
1 | 1 | 2 | 2 | 0.17 |
1 | 1 | 2 | 2 | 0.5 |
1 | 1 | 2 | 2 | 0.33 |
1 | 1 | 2 | 2 | 0.33 |
1 | 1 | 2 | 2 | 0.5 |
1 | 1 | 2 | 2 | 0.33 |
1 | 1 | 2 | 2 | |
1 | 1 | 2 | 1 | 0.67 |
1 | 1 | 2 | 2 | 0.67 |
1 | 1 | 2 | 3 | 0.33 |
1 | 1 | 2 | 3 | 0.33 |
1 | 1 | 2 | 3 | 0.17 |
1 | 1 | 3 | 1 | 0.67 |
1 | 1 | 3 | 2 | 0.5 |
1 | 1 | 3 | 2 | 0.5 |
1 | 1 | 3 | 2 | 0.33 |
1 | 1 | 3 | 2 | 0.33 |
1 | 1 | 3 | 2 | 0.5 |
1 | 1 | 3 | 2 | 0.33 |
1 | 1 | 3 | 2 | 0.33 |
1 | 1 | 3 | 2 | 0.17 |
1 | 1 | 3 | 2 | 0.33 |
1 | 1 | 3 | 2 | 0.33 |
1 | 1 | 3 | 2 | 0.67 |
1 | 1 | 3 | 3 | 0.17 |
1 | 1 | 3 | 3 | 0.17 |
1 | 1 | 3 | 3 | 0.17 |
1 | 1 | 3 | 3 | 0.17 |
1 | 1 | 4 | 1 | 1 |
1 | 1 | 4 | 2 | 1 |
1 | 1 | 4 | 3 | 0.5 |
1 | 1 | 4 | 2 | 1 |
1 | 1 | 4 | 3 | 0.67 |
1 | 1 | 4 | 3 | 0.5 |
1 | 1 | 4 | 2 | 1 |
1 | 1 | 4 | 3 | 0.67 |
1 | 1 | 4 | 4 | 0.67 |
1 | 1 | 4 | 3 | 0.67 |
1 | 1 | 4 | 2 | 0.83 |
1 | 1 | 4 | 3 | 1 |
1 | 1 | 4 | 4 | 0.67 |
1 | 1 | 5 | 2 | 0.83 |
1 | 1 | 5 | 3 | 0.33 |
1 | 1 | 5 | 3 | 0.33 |
1 | 1 | 6 | 2 | 0.83 |
1 | 1 | 6 | 3 | 0.5 |
1 | 1 | 6 | 3 | 0.67 |
1 | 1 | 6 | 3 | 0.17 |
2 | 0 | 1 | 1 | 1 |
2 | 0 | 1 | 2 | 1 |
2 | 0 | 1 | 2 | 1 |
2 | 0 | 2 | 1 | 1 |
2 | 0 | 2 | 2 | 1 |
2 | 0 | 2 | 3 | 0.83 |
2 | 0 | 2 | 2 | 1 |
2 | 0 | 2 | 3 | 0.83 |
2 | 0 | 2 | 2 | 1 |
2 | 0 | 2 | 2 | 0.83 |
2 | 0 | 2 | 2 | 1 |
2 | 0 | 2 | 2 | 1 |
2 | 0 | 2 | 3 | 0.83 |
2 | 0 | 2 | 2 | 1 |
2 | 0 | 2 | 3 | 0.5 |
2 | 0 | 2 | 2 | 1 |
2 | 0 | 3 | 1 | 1 |
2 | 0 | 3 | 2 | 1 |
2 | 0 | 3 | 3 | 0.83 |
2 | 0 | 3 | 2 | 1 |
2 | 0 | 3 | 2 | 1 |
2 | 0 | 3 | 2 | 1 |
2 | 0 | 3 | 2 | 1 |
2 | 0 | 3 | 3 | 0.33 |
2 | 0 | 3 | 2 | 0.67 |
2 | 0 | 3 | 2 | 1 |
2 | 0 | 3 | 2 | 0.83 |
2 | 0 | 3 | 2 | 1 |
2 | 0 | 3 | 3 | 0.83 |
2 | 0 | 3 | 2 | 1 |
2 | 0 | 4 | 1 | 1 |
2 | 0 | 4 | 2 | 1 |
2 | 0 | 4 | 3 | 0.33 |
2 | 0 | 4 | 2 | 1 |
2 | 0 | 4 | 3 | 0.67 |
2 | 0 | 4 | 2 | 1 |
2 | 0 | 4 | 3 | 0.67 |
2 | 0 | 4 | 2 | 0.5 |
2 | 0 | 4 | 1 | 0.83 |
2 | 0 | 4 | 1 | 0.83 |
2 | 0 | 4 | 1 | 0.83 |
2 | 0 | 4 | 2 | 1 |
2 | 0 | 4 | 3 | 0.33 |
2 | 0 | 4 | 2 | 0.83 |
2 | 0 | 5 | 2 | 0.5 |
2 | 0 | 5 | 1 | 1 |
2 | 0 | 5 | 2 | 0.83 |
2 | 0 | 5 | 2 | 0.83 |
2 | 0 | 6 | 2 | 1 |
2 | 0 | 6 | 3 | 0.67 |
2 | 0 | 6 | 2 | 1 |
2 | 0 | 6 | 3 | 0.83 |
2 | 0 | 6 | 3 | 0.83 |
3 | 1 | 1 | 1 | 0.67 |
3 | 1 | 1 | 2 | 0.67 |
3 | 1 | 1 | 3 | 0.33 |
3 | 1 | 1 | 3 | 0.33 |
3 | 1 | 2 | 1 | 0.67 |
3 | 1 | 2 | 2 | 0.33 |
3 | 1 | 2 | 1 | 0.83 |
3 | 1 | 2 | 2 | 1 |
3 | 1 | 2 | 3 | 0.33 |
3 | 1 | 2 | 2 | 0.67 |
3 | 1 | 2 | 2 | 0.67 |
3 | 1 | 2 | 3 | |
3 | 1 | 2 | 2 | 0.5 |
3 | 1 | 2 | 2 | 0.5 |
3 | 1 | 2 | 2 | 0.67 |
3 | 1 | 2 | 2 | 0.67 |
3 | 1 | 2 | 2 | 1 |
3 | 1 | 2 | 3 | 0.5 |
3 | 1 | 2 | 2 | 0.83 |
3 | 1 | 3 | 1 | 0.83 |
3 | 1 | 3 | 2 | 0.67 |
3 | 1 | 3 | 2 | 0.67 |
3 | 1 | 3 | 3 | 0.17 |
3 | 1 | 3 | 2 | 1 |
3 | 1 | 3 | 3 | 0.5 |
3 | 1 | 3 | 3 | 0.67 |
3 | 1 | 3 | 3 | 0.5 |
3 | 1 | 3 | 2 | 0.83 |
3 | 1 | 3 | 3 | 0.33 |
3 | 1 | 3 | 2 | 1 |
3 | 1 | 3 | 3 | 0.67 |
3 | 1 | 3 | 3 | 0.67 |
3 | 1 | 3 | 3 | 0.5 |
3 | 1 | 3 | 3 | 0.33 |
3 | 1 | 4 | 1 | 0.83 |
3 | 1 | 4 | 2 | 0.67 |
3 | 1 | 4 | 3 | 0.5 |
3 | 1 | 4 | 2 | 1 |
3 | 1 | 4 | 3 | 0.33 |
3 | 1 | 4 | 3 | 0.67 |
3 | 1 | 4 | 3 | 0.83 |
3 | 1 | 4 | 4 | 0.33 |
3 | 1 | 4 | 3 | 0.33 |
3 | 1 | 4 | 2 | 0.5 |
3 | 1 | 4 | 2 | 1 |
3 | 1 | 4 | 3 | 0.33 |
3 | 1 | 4 | 3 | 0.17 |
3 | 1 | 4 | 2 | 1 |
3 | 1 | 4 | 3 | 0.33 |
3 | 1 | 5 | 2 | 1 |
3 | 1 | 5 | 3 | 0.67 |
3 | 1 | 5 | 3 | 0.33 |
3 | 1 | 6 | 2 | 0.17 |
3 | 1 | 6 | 1 | 1 |
3 | 1 | 6 | 2 | 0.83 |
3 | 1 | 6 | 3 | 0.83 |
3 | 1 | 6 | 4 | 0.17 |
3 | 1 | 6 | 4 | 0.5 |
4 | 0 | 1 | 1 | 1 |
4 | 0 | 1 | 2 | 0.5 |
4 | 0 | 1 | 2 | 0.5 |
4 | 0 | 2 | 1 | 1 |
4 | 0 | 2 | 2 | 0.5 |
4 | 0 | 2 | 2 | 0.5 |
4 | 0 | 2 | 2 | 1 |
4 | 0 | 2 | 3 | 0.5 |
4 | 0 | 2 | 3 | 0.67 |
4 | 0 | 2 | 3 | 0.33 |
4 | 0 | 2 | 3 | 0.33 |
4 | 0 | 2 | 3 | 0.5 |
4 | 0 | 2 | 3 | 0.17 |
4 | 0 | 2 | 3 | 0.67 |
4 | 0 | 2 | 3 | 0.33 |
4 | 0 | 2 | 3 | 0.67 |
4 | 0 | 3 | 1 | 1 |
4 | 0 | 3 | 2 | 1 |
4 | 0 | 3 | 3 | 0.5 |
4 | 0 | 3 | 3 | 0.5 |
4 | 0 | 3 | 2 | 0.67 |
4 | 0 | 3 | 2 | 0.67 |
4 | 0 | 3 | 2 | 0.67 |
4 | 0 | 3 | 2 | 0.67 |
4 | 0 | 3 | 2 | 0.67 |
4 | 0 | 3 | 2 | 0.33 |
4 | 0 | 3 | 2 | 0.5 |
4 | 0 | 3 | 2 | 0.17 |
4 | 0 | 3 | 3 | 0.33 |
4 | 0 | 4 | 1 | 1 |
4 | 0 | 4 | 2 | 0.67 |
4 | 0 | 4 | 2 | 0.67 |
4 | 0 | 4 | 3 | 0.33 |
4 | 0 | 4 | 3 | 0.5 |
4 | 0 | 4 | 2 | 0.5 |
4 | 0 | 4 | 2 | 0.5 |
4 | 0 | 4 | 2 | 0.83 |
4 | 0 | 4 | 3 | 0.17 |
4 | 0 | 4 | 2 | 0.5 |
4 | 0 | 4 | 2 | 0.33 |
4 | 0 | 4 | 1 | 1 |
4 | 0 | 4 | 2 | 0.5 |
4 | 0 | 4 | 2 | 1 |
4 | 0 | 5 | 1 | 1 |
4 | 0 | 5 | 2 | 1 |
4 | 0 | 5 | 3 | 0.33 |
4 | 0 | 5 | 2 | 0.5 |
4 | 0 | 6 | 2 | 0.5 |
4 | 0 | 6 | 2 | 0.5 |
4 | 0 | 6 | 2 | 0.5 |
4 | 0 | 6 | 3 | |
6 | 0 | 1 | 1 | 1 |
6 | 0 | 1 | 2 | 1 |
6 | 0 | 1 | 3 | 0.67 |
6 | 0 | 1 | 2 | 0.83 |
6 | 0 | 2 | 1 | 1 |
6 | 0 | 2 | 2 | 1 |
6 | 0 | 2 | 3 | 0.17 |
6 | 0 | 2 | 2 | 1 |
6 | 0 | 2 | 3 | 0.67 |
6 | 0 | 2 | 3 | 0.83 |
6 | 0 | 2 | 3 | 0.67 |
6 | 0 | 2 | 2 | 1 |
6 | 0 | 2 | 3 | 1 |
6 | 0 | 2 | 4 | 0.5 |
6 | 0 | 3 | 1 | 1 |
6 | 0 | 3 | 2 | 1 |
6 | 0 | 3 | 3 | 0.5 |
6 | 0 | 3 | 2 | 1 |
6 | 0 | 3 | 3 | 0.67 |
6 | 0 | 3 | 3 | 0.5 |
6 | 0 | 3 | 2 | 1 |
6 | 0 | 3 | 3 | 0.67 |
6 | 0 | 3 | 4 | 0.67 |
6 | 0 | 3 | 3 | 0.67 |
6 | 0 | 3 | 2 | 0.83 |
6 | 0 | 3 | 3 | 1 |
6 | 0 | 3 | 4 | 0.67 |
6 | 0 | 4 | 2 | 1 |
6 | 0 | 4 | 3 | 0.67 |
6 | 0 | 4 | 3 | 0.67 |
6 | 0 | 4 | 3 | 1 |
6 | 0 | 4 | 4 | 0.33 |
6 | 0 | 4 | 3 | 0.67 |
6 | 0 | 4 | 3 | 0.83 |
6 | 0 | 4 | 2 | 1 |
6 | 0 | 4 | 3 | 1 |
6 | 0 | 4 | 4 | 0.67 |
6 | 0 | 4 | 3 | 1 |
6 | 0 | 4 | 4 | 0.5 |
6 | 0 | 4 | 3 | 0.67 |
6 | 0 | 5 | 2 | 1 |
6 | 0 | 5 | 3 | 1 |
6 | 0 | 5 | 4 | 0.5 |
6 | 0 | 6 | 2 | 0.83 |
6 | 0 | 6 | 3 | 1 |
6 | 0 | 6 | 4 | 0.83 |
6 | 0 | 6 | 4 | 0.83 |
7 | 0 | 1 | 1 | 0.67 |
7 | 0 | 1 | 1 | 0.83 |
7 | 0 | 1 | 2 | 0.33 |
7 | 0 | 2 | 1 | 0.67 |
7 | 0 | 2 | 1 | 1 |
7 | 0 | 2 | 2 | 0.33 |
7 | 0 | 2 | 1 | 0.83 |
7 | 0 | 2 | 2 | 0.33 |
7 | 0 | 2 | 2 | 0.5 |
7 | 0 | 2 | 1 | 0.83 |
7 | 0 | 2 | 1 | 1 |
7 | 0 | 2 | 2 | 0.67 |
7 | 0 | 3 | 1 | 1 |
7 | 0 | 3 | 2 | 0.33 |
7 | 0 | 3 | 2 | 0.5 |
7 | 0 | 3 | 2 | 0.67 |
7 | 0 | 3 | 2 | 0.83 |
7 | 0 | 3 | 1 | 0.83 |
7 | 0 | 3 | 2 | 0.67 |
7 | 0 | 3 | 1 | 0.83 |
7 | 0 | 3 | 2 | 0.67 |
7 | 0 | 4 | 2 | 0.67 |
7 | 0 | 4 | 1 | 0.83 |
7 | 0 | 4 | 2 | 0.67 |
7 | 0 | 4 | 2 | 0.17 |
7 | 0 | 4 | 1 | 0.83 |
7 | 0 | 4 | 2 | 0.17 |
7 | 0 | 4 | 1 | 0.83 |
7 | 0 | 4 | 2 | 0.5 |
7 | 0 | 4 | 2 | 0.5 |
7 | 0 | 4 | 1 | 0.67 |
7 | 0 | 5 | 2 | 1 |
7 | 0 | 5 | 3 | 0.33 |
7 | 0 | 5 | 2 | 0.83 |
7 | 0 | 6 | 2 | 0.5 |
7 | 0 | 6 | 2 | 0.67 |
7 | 0 | 6 | 3 | 0.17 |
7 | 0 | 6 | 2 | 0.33 |