Error with installation of new packages in RStudio

General
1

Hello to all,

I am new here and I am having a lot of problems installing new packages on RStudio.
I have recently installed a new version of Linux (Ubuntu 23.04), R (4.2.2 patched), and Rstudio (2023.03.0 buid 386) but this and I am actually almost unable to install some packages. I guess this is due to lack of proper dependencies.
For example I tried to install the package simRAD but I got this error message:

ERROR: dependency ‘latticeExtra’ is not available for package ‘ShortRead’

  • removing ‘/home/bruno/R/x86_64-pc-linux-gnu-library/4.2/ShortRead’
    Warning in install.packages :
    installation of package ‘ShortRead’ had non-zero exit status
    ERROR: dependency ‘ShortRead’ is not available for package ‘SimRAD’
  • removing ‘/home/bruno/R/x86_64-pc-linux-gnu-library/4.2/SimRAD’
    Warning in install.packages :
    installation of package ‘SimRAD’ had non-zero exit status

The downloaded source packages are in
‘/tmp/RtmpjDTrBA/downloaded_packages’

I use R but not very expert about configuration: anyone has any suggest for me?
Thanks in advance!

Bruno
2

If you run

install.packages("laticeExtra")

does it work?
What command exactly are you running to install simRAD?

3

Hello,
Thanks for your answer. I tried again with this command:

install.packages("SimRAD")
Installing package into ‘/home/bruno/R/x86_64-pc-linux-gnu-library/4.2’
(as ‘lib’ is unspecified)
Warning in install.packages :
dependency ‘ShortRead’ is not available
trying URL 'https://cloud.r-project.org/src/contrib/SimRAD_0.96.tar.gz'
Content type 'application/x-gzip' length 9299 bytes
==================================================
downloaded 9299 bytes

ERROR: dependency ‘ShortRead’ is not available for package ‘SimRAD’

  • removing ‘/home/bruno/R/x86_64-pc-linux-gnu-library/4.2/SimRAD’
    Warning in install.packages :
    installation of package ‘SimRAD’ had non-zero exit status

The downloaded source packages are in
‘/tmp/RtmpEgzp37/downloaded_packages’

Then I tried to install the required dependencies: "ShortRead" and "latticeExtra" but I got an identical error message.

4

This topic was automatically closed 42 days after the last reply. New replies are no longer allowed.

If you have a query related to it or one of the replies, start a new topic and refer back with a link.