Error Information:
Description of issue -
I am using RStudio on my university standard operating environment PC. In December I upgraded my R version to R 3.5.1 and RStudio to Version 1.1.456. After this I did several analyses and all was fine. Yesterday I returned after the Christmas break and found that RStudio was taking 5 minutes to load. When it is loaded I can run previously written code but if I try to switch into the package manager I get a never ending progress wheel. I have provided the diagnostic report after loading RStudio, I cannot generate one after trying to access the package manager. I found an article suggesting installing the daily build but unfortunately I can't do that because I can only access the builds packaged in our SOE. Any suggestions would be much appreciated.
Attempted steps taken to fix -
- Re-start computer
- Clear space on computer then re-start
- Un-install and re-install RStudio (through software management system)
- Resetting RStudio Desktop state as suggested here: https://support.rstudio.com/hc/en-us/articles/200534577-Resetting-RStudio-s-State
System Information:
- RStudio Edition: Desktop
- RStudio Version: 1.1.456
- OS Version: Windows 8.1 enterprise
- R Version: 3.5.1
- Output your diagnostics report (if possible):
[1] "1.1.456"
$R
[1] "M:\\R Statistics\\R-3.5.1\\bin\\x64\\R.exe"
$pdflatex
[1] ""
$bibtex
[1] ""
$gcc
[1] ""
$git
[1] ""
$svn
[1] ""
R version 3.5.1 (2018-07-02)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows >= 8 x64 (build 9200)
Matrix products: default
locale:
[1] LC_COLLATE=English_United Kingdom.1252 LC_CTYPE=English_United Kingdom.1252
[3] LC_MONETARY=English_United Kingdom.1252 LC_NUMERIC=C
[5] LC_TIME=English_United Kingdom.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_3.5.1 tools_3.5.1 yaml_2.2.0
SysInfo:
sysname release version nodename machine login user
"Windows" ">= 8 x64" "build 9200" "KCLJ8ZFF62" "x86-64" "k1634825" "k1634825"
effective_user
"k1634825"
R Version:
_
platform x86_64-w64-mingw32
arch x86_64
os mingw32
system x86_64, mingw32
status
major 3
minor 5.1
year 2018
month 07
day 02
svn rev 74947
language R
version.string R version 3.5.1 (2018-07-02)
nickname Feather Spray
$ALLUSERSPROFILE
[1] "C:\\ProgramData"
$APPDATA
[1] "C:\\Users\\k1634825\\AppData\\Roaming"
$CLICOLOR_FORCE
[1] "1"
$CommonProgramFiles
[1] "C:\\Program Files\\Common Files"
$`CommonProgramFiles(x86)`
[1] "C:\\Program Files (x86)\\Common Files"
$CommonProgramW6432
[1] "C:\\Program Files\\Common Files"
$COMPUTERNAME
[1] "KCLJ8ZFF62"
$ComSpec
[1] "C:\\WINDOWS\\system32\\cmd.exe"
$DISPLAY
[1] ":0"
$FP_NO_HOST_CHECK
[1] "NO"
$GFORTRAN_STDERR_UNIT
[1] "-1"
$GFORTRAN_STDOUT_UNIT
[1] "-1"
$HOME
[1] "//kclad.ds.kcl.ac.uk/anywhere/UserData/PSStore01/k1634825/My Documents"
$HOMEDRIVE
[1] "N:"
$HOMEPATH
[1] "\\"
$HOMESHARE
[1] "\\\\kclad.ds.kcl.ac.uk\\anywhere\\UserData\\PSStore01\\k1634825"
$KCLLogs
[1] "C:\\ProgramData\\KCL\\Logs"
$LOCALAPPDATA
[1] "C:\\Users\\k1634825\\AppData\\Local"
$LOGONSERVER
[1] "\\\\KCLGUYCDC01"
$MSYS2_ENV_CONV_EXCL
[1] "R_ARCH"
$NUMBER_OF_PROCESSORS
[1] "4"
$OneDrive
[1] "C:\\Users\\k1634825\\OneDrive - King's College London"
$OneDriveCommercial
[1] "C:\\Users\\k1634825\\OneDrive - King's College London"
$OS
[1] "Windows_NT"
$PATH
[1] "M:\\R Statistics\\R-3.5.1\\bin\\x64;C:\\Program Files (x86)\\Common Files\\Oracle\\Java\\javapath;C:\\ProgramData\\Oracle\\Java\\javapath;C:\\WINDOWS\\system32;C:\\WINDOWS;C:\\WINDOWS\\System32\\Wbem;C:\\WINDOWS\\System32\\WindowsPowerShell\\v1.0\\;M:\\pcraster-4.0.2_x86-64\\bin;M:\\pcraster-4.0.2_x86-64\\python;C:\\Program Files (x86)\\QuickTime\\QTSystem\\;C:\\AppliedBiosystems\\SDS2.4\\lib\\algorithm\\bin\\win32;C:\\AppliedBiosystems\\SDS2.4\\lib"
$PATHEXT
[1] ".COM;.EXE;.BAT;.CMD;.VBS;.VBE;.JS;.JSE;.WSF;.WSH;.MSC"
$PROCESSOR_ARCHITECTURE
[1] "AMD64"
$PROCESSOR_IDENTIFIER
[1] "Intel64 Family 6 Model 94 Stepping 3, GenuineIntel"
$PROCESSOR_LEVEL
[1] "6"
$PROCESSOR_REVISION
[1] "5e03"
$ProgramData
[1] "C:\\ProgramData"
$ProgramFiles
[1] "C:\\Program Files"
$`ProgramFiles(x86)`
[1] "C:\\Program Files (x86)"
$ProgramW6432
[1] "C:\\Program Files"
$PSModulePath
[1] "C:\\WINDOWS\\system32\\WindowsPowerShell\\v1.0\\Modules\\;C:\\Program Files\\Microsoft User Experience Virtualization\\Modules\\;C:\\Program Files\\Microsoft Application Virtualization\\Client\\"
$PUBLIC
[1] "C:\\Users\\Public"
$PYTHONPATH
[1] "M:\\pcraster-4.0.2_x86-64\\python"
$R_ARCH
[1] "/x64"
$R_COMPILED_BY
[1] "gcc 4.9.3"
$R_DOC_DIR
[1] "M:/R Statistics/R-3.5.1/doc"
$R_HOME
[1] "M:/R Statistics/R-3.5.1"
$R_LIBS_USER
[1] "//kclad.ds.kcl.ac.uk/anywhere/UserData/PSStore01/k1634825/My Documents/R/win-library/3.5"
$R_USER
[1] "//kclad.ds.kcl.ac.uk/anywhere/UserData/PSStore01/k1634825/My Documents"
$RMARKDOWN_MATHJAX_PATH
[1] "//kclad.ds.kcl.ac.uk/Appdata/StudentApps/RStudio/RStudio-1.1.456/resources/mathjax-26"
$RS_LOCAL_PEER
[1] "\\\\.\\pipe\\22972-rsession"
$RS_RPOSTBACK_PATH
[1] "//kclad.ds.kcl.ac.uk/Appdata/StudentApps/RStudio/RStudio-1.1.456/bin/rpostback"
$RS_SHARED_SECRET
[1] "63341846741"
$RSTUDIO
[1] "1"
$RSTUDIO_CONSOLE_COLOR
[1] "256"
$RSTUDIO_CONSOLE_WIDTH
[1] "80"
$RSTUDIO_MSYS_SSH
[1] "//kclad.ds.kcl.ac.uk/Appdata/StudentApps/RStudio/RStudio-1.1.456/bin/msys-ssh-1000-18"
$RSTUDIO_PANDOC
[1] "//kclad.ds.kcl.ac.uk/Appdata/StudentApps/RStudio/RStudio-1.1.456/bin/pandoc"
$RSTUDIO_SESSION_PORT
[1] "22972"
$RSTUDIO_USER_IDENTITY
[1] "k1634825"
$RSTUDIO_WINUTILS
[1] "//kclad.ds.kcl.ac.uk/Appdata/StudentApps/RStudio/RStudio-1.1.456/bin/winutils"
$SDS_ALGO_PATH
[1] "C:\\AppliedBiosystems\\SDS2.4\\lib\\algorithm\\bin\\win32;C:\\AppliedBiosystems\\SDS2.4\\lib"
$SESSIONNAME
[1] "Console"
$snow_agent
[1] "C:\\Program Files\\Snow Software\\Inventory\\Agent"
$SNOW_INVENTORY_HOME
[1] "C:\\Program Files\\INVENTORYCLIENT\\"
$SystemDrive
[1] "C:"
$SystemRoot
[1] "C:\\WINDOWS"
$TEMP
[1] "C:\\Users\\k1634825\\AppData\\Local\\Temp"
$TERM
[1] "xterm-256color"
$TMP
[1] "C:\\Users\\k1634825\\AppData\\Local\\Temp"
$UATDATA
[1] "C:\\WINDOWS\\CCM\\UATData\\D9F8C395-CAB8-491d-B8AC-179A1FE1BE77"
$USERDNSDOMAIN
[1] "KCLAD.DS.KCL.AC.UK"
$USERDOMAIN
[1] "KCLAD"
$USERDOMAIN_ROAMINGPROFILE
[1] "KCLAD"
$USERNAME
[1] "k1634825"
$USERPROFILE
[1] "C:\\Users\\k1634825"
$windir
[1] "C:\\WINDOWS"
[1] ".GlobalEnv" "tools:rstudio" "package:stats" "package:graphics" "package:grDevices"
[6] "package:utils" "package:datasets" "package:methods" "Autoloads" "package:base"
Log file: rdesktop.log
--------------------------------------------------
(Empty)
Log file: rsession-k1634825.log
--------------------------------------------------
03 Jan 2019 18:03:17 [rsession-k1634825] CLIENT EXCEPTION (rsession-k1634825): (TypeError) : undefined is not an object (evaluating 'this.a.a.r.row');|||com/google/gwt/dev/jjs/intrinsic/com/google/gwt/lang/Exceptions.java#28::wrap|||com/google/gwt/core/client/impl/SchedulerImpl.java#167::runScheduledTasks|||com/google/gwt/core/client/impl/SchedulerImpl.java#338::flushPostEventPumpCommands|||com/google/gwt/core/client/impl/SchedulerImpl.java#76::execute|||com/google/gwt/core/client/impl/SchedulerImpl.java#140::execute|||com/google/gwt/core/client/impl/Impl.java#244::apply|||com/google/gwt/core/client/impl/Impl.java#283::entry0|||#-1::anonymous|||com/google/gwt/cell/client/AbstractEditableCell.java#41::viewDataMap|||Client-ID: 33e600bb-c1b1-46bf-b562-ab5cba070b0e|||User-Agent: Mozilla/5.0 (Windows NT 6.2 WOW64) AppleWebKit/538.1 (KHTML, like Gecko) rstudio Safari/538.1 Qt/5.4.1