Hi there,
I want to get the loading values for a PCoA, I mean how much is each variable contributing.
I am using pcoa() from ape package
Thank you!
Hi there,
I want to get the loading values for a PCoA, I mean how much is each variable contributing.
I am using pcoa() from ape package
Thank you!
You can usually get a good idea by assigning the output to an object, then using str()
pcoa_output <- pcoa(my_dist_matrix)
str(pcoa_output)
I don't have ape
installed but look at https://rdrr.io/cran/ape/man/pcoa.html
or
?ape::pcoa
to see the components in the output (under the Value heading)
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