gg_tsresiduals not working

tidyverse
#1

Hi,

I've updated R recently, and I was trying to execute the code from "Forecasting: Principles and Practice" on section 5.4:

# Re-index based on trading days
google_stock <- tsibbledata::gafa_stock %>%
  filter(Symbol == "GOOG") %>%
  mutate(day = row_number()) %>%
  update_tsibble(index = day, regular = TRUE)

# Filter the year of interest
google_2015 <- google_stock %>% filter(year(Date) == 2015)

google_2015 %>% model(NAIVE(Close)) %>% gg_tsresiduals()

But I am getting an error:

<error/vctrs_error_incompatible_op>
<interval> + <integer> is not permitted
Backtrace:
  1. fabletools::model(., NAIVE(Close))
  9. feasts::gg_tsresiduals(.)
 10. feasts::gg_tsdisplay(...)
 12. feasts:::autoplot.tbl_cf(ACF(data, !!y, lag_max = lag_max))
 18. inum:::format.interval(interval)
 19. vctrs:::`+.vctrs_vctr`(x, 1L)
 21. vctrs:::vec_arith.default("+", e1, e2)
 22. vctrs::stop_incompatible_op(op, x, y)
 23. vctrs:::stop_incompatible(...)
 24. vctrs:::stop_vctrs(...)

Any idea how can I make it work?

#2

There is currently an incompatibility between fable and fabletools on CRAN, and the dplyr and tsibble packages. We are working to have them updated asap. You could update to the dev versions using

devtools::install_github(c("tidyverts/fabletools","tidyverts/fable"))
#4

Could be something on feasts package?

Even a simple example is not working:

tsibbledata::vic_elec %>% ACF(Temperature)

And I get the same error. Using rlang last_trace I have the following:

<error/vctrs_error_incompatible_op>
<interval> + <integer> is not permitted
Backtrace:
     █
  1. ├─(function (x, ...) ...
  2. └─tibble:::print.tbl(x)
  3.   ├─cli::cat_line(format(x, ..., n = n, width = width, n_extra = n_extra))
  4.   │ └─base::paste0(..., collapse = "\n")
  5.   ├─base::format(x, ..., n = n, width = width, n_extra = n_extra)
  6.   └─tsibble:::format.tbl_ts(x, ..., n = n, width = width, n_extra = n_extra)
  7.     ├─base::format(trunc_mat(x, n = n, width = width, n_extra = n_extra))
  8.     └─tibble:::format.trunc_mat(...)
  9.       └─pillar::squeeze(x$mcf, width = width)
 10.         └─pillar:::colonnade_get_width(x, width, rowid_width)
 11.           └─pillar:::map(x[pillar_shown], pillar_shaft)
 12.             └─base::lapply(.x, .f, ...)
 13.               ├─pillar:::FUN(X[[i]], ...)
 14.               └─pillar:::pillar_shaft.vctrs_vctr(X[[i]], ...)
 15.                 ├─pillar::new_pillar_shaft_simple(format(x), align = align)
 16.                 │ └─pillar::get_max_extent(as.character(formatted))
 17.                 │   └─pillar::get_extent(x)
 18.                 │     └─base::force(x)
 19.                 ├─base::format(x)
 20.                 └─feasts:::format.cf_lag(x)
 21.                   ├─base::substring(...)
 22.                   ├─base::format(interval)
 23.                   └─inum:::format.interval(interval)
 24.                     └─vctrs:::`+.vctrs_vctr`(x, 1L)
 25.                       ├─vctrs::vec_arith("+", e1, e2)
 26.                       └─vctrs:::vec_arith.default("+", e1, e2)
 27.                         └─vctrs::stop_incompatible_op(op, x, y)
 28.                           └─vctrs:::stop_incompatible(...)
 29.                             └─vctrs:::stop_vctrs(...)
#8

It seems it worked under reprex. I have no idea why, though...

library(dplyr)
#> 
#> Attaching package: 'dplyr'
#> The following objects are masked from 'package:stats':
#> 
#>     filter, lag
#> The following objects are masked from 'package:base':
#> 
#>     intersect, setdiff, setequal, union
library(feasts)
#> Loading required package: fabletools
tsibbledata::vic_elec %>% ACF(Temperature)
#> # A tsibble: 47 x 2 [30m]
#>      lag   acf
#>    <lag> <dbl>
#>  1   30m 0.994
#>  2   60m 0.982
#>  3   90m 0.967
#>  4  120m 0.948
#>  5  150m 0.925
#>  6  180m 0.901
#>  7  210m 0.873
#>  8  240m 0.845
#>  9  270m 0.815
#> 10  300m 0.785
#> # … with 37 more rows


devtools::session_info()
#> ─ Session info ───────────────────────────────────────────────────────────────
#>  setting  value                       
#>  version  R version 4.0.1 (2020-06-06)
#>  os       macOS Catalina 10.15.5      
#>  system   x86_64, darwin17.0          
#>  ui       X11                         
#>  language (EN)                        
#>  collate  en_US.UTF-8                 
#>  ctype    en_US.UTF-8                 
#>  tz       America/Sao_Paulo           
#>  date     2020-06-13                  
#> 
#> ─ Packages ───────────────────────────────────────────────────────────────────
#>  package        * version date       lib source                               
#>  anytime          0.3.7   2020-01-20 [1] CRAN (R 4.0.0)                       
#>  assertthat       0.2.1   2019-03-21 [1] CRAN (R 4.0.0)                       
#>  backports        1.1.7   2020-05-13 [1] CRAN (R 4.0.0)                       
#>  callr            3.4.3   2020-03-28 [1] CRAN (R 4.0.0)                       
#>  cli              2.0.2   2020-02-28 [1] CRAN (R 4.0.0)                       
#>  colorspace       1.4-1   2019-03-18 [1] CRAN (R 4.0.0)                       
#>  crayon           1.3.4   2017-09-16 [1] CRAN (R 4.0.0)                       
#>  desc             1.2.0   2018-05-01 [1] CRAN (R 4.0.0)                       
#>  devtools         2.3.0   2020-04-10 [1] CRAN (R 4.0.0)                       
#>  digest           0.6.25  2020-02-23 [1] CRAN (R 4.0.0)                       
#>  distributional   0.1.0   2020-06-09 [1] CRAN (R 4.0.0)                       
#>  dplyr          * 1.0.0   2020-05-29 [1] CRAN (R 4.0.0)                       
#>  ellipsis         0.3.1   2020-05-15 [1] CRAN (R 4.0.0)                       
#>  evaluate         0.14    2019-05-28 [1] CRAN (R 4.0.0)                       
#>  fabletools     * 0.2.0   2020-06-12 [1] Github (tidyverts/fabletools@4f7738b)
#>  fansi            0.4.1   2020-01-08 [1] CRAN (R 4.0.0)                       
#>  farver           2.0.3   2020-01-16 [1] CRAN (R 4.0.0)                       
#>  feasts         * 0.1.3   2020-03-18 [1] CRAN (R 4.0.0)                       
#>  fs               1.4.1   2020-04-04 [1] CRAN (R 4.0.0)                       
#>  generics         0.0.2   2018-11-29 [1] CRAN (R 4.0.0)                       
#>  ggplot2          3.3.1   2020-05-28 [1] CRAN (R 4.0.0)                       
#>  glue             1.4.1   2020-05-13 [1] CRAN (R 4.0.0)                       
#>  gtable           0.3.0   2019-03-25 [1] CRAN (R 4.0.0)                       
#>  highr            0.8     2019-03-20 [1] CRAN (R 4.0.0)                       
#>  htmltools        0.4.0   2019-10-04 [1] CRAN (R 4.0.0)                       
#>  knitr            1.28    2020-02-06 [1] CRAN (R 4.0.0)                       
#>  lifecycle        0.2.0   2020-03-06 [1] CRAN (R 4.0.0)                       
#>  lubridate        1.7.9   2020-06-08 [1] CRAN (R 4.0.1)                       
#>  magrittr         1.5     2014-11-22 [1] CRAN (R 4.0.0)                       
#>  memoise          1.1.0   2017-04-21 [1] CRAN (R 4.0.0)                       
#>  munsell          0.5.0   2018-06-12 [1] CRAN (R 4.0.0)                       
#>  pillar           1.4.4   2020-05-05 [1] CRAN (R 4.0.0)                       
#>  pkgbuild         1.0.8   2020-05-07 [1] CRAN (R 4.0.0)                       
#>  pkgconfig        2.0.3   2019-09-22 [1] CRAN (R 4.0.0)                       
#>  pkgload          1.1.0   2020-05-29 [1] CRAN (R 4.0.0)                       
#>  prettyunits      1.1.1   2020-01-24 [1] CRAN (R 4.0.0)                       
#>  processx         3.4.2   2020-02-09 [1] CRAN (R 4.0.0)                       
#>  ps               1.3.3   2020-05-08 [1] CRAN (R 4.0.0)                       
#>  purrr            0.3.4   2020-04-17 [1] CRAN (R 4.0.0)                       
#>  R6               2.4.1   2019-11-12 [1] CRAN (R 4.0.0)                       
#>  Rcpp             1.0.4.6 2020-04-09 [1] CRAN (R 4.0.0)                       
#>  remotes          2.1.1   2020-02-15 [1] CRAN (R 4.0.0)                       
#>  rlang            0.4.6   2020-05-02 [1] CRAN (R 4.0.0)                       
#>  rmarkdown        2.2     2020-05-31 [1] CRAN (R 4.0.0)                       
#>  rprojroot        1.3-2   2018-01-03 [1] CRAN (R 4.0.0)                       
#>  scales           1.1.1   2020-05-11 [1] CRAN (R 4.0.0)                       
#>  sessioninfo      1.1.1   2018-11-05 [1] CRAN (R 4.0.0)                       
#>  stringi          1.4.6   2020-02-17 [1] CRAN (R 4.0.0)                       
#>  stringr          1.4.0   2019-02-10 [1] CRAN (R 4.0.0)                       
#>  testthat         2.3.2   2020-03-02 [1] CRAN (R 4.0.0)                       
#>  tibble           3.0.1   2020-04-20 [1] CRAN (R 4.0.0)                       
#>  tidyr            1.1.0   2020-05-20 [1] CRAN (R 4.0.0)                       
#>  tidyselect       1.1.0   2020-05-11 [1] CRAN (R 4.0.0)                       
#>  tsibble          0.9.0   2020-06-04 [1] CRAN (R 4.0.1)                       
#>  tsibbledata      0.2.0   2020-06-04 [1] CRAN (R 4.0.1)                       
#>  usethis          1.6.1   2020-04-29 [1] CRAN (R 4.0.0)                       
#>  utf8             1.1.4   2018-05-24 [1] CRAN (R 4.0.0)                       
#>  vctrs            0.3.1   2020-06-05 [1] CRAN (R 4.0.0)                       
#>  withr            2.2.0   2020-04-20 [1] CRAN (R 4.0.0)                       
#>  xfun             0.14    2020-05-20 [1] CRAN (R 4.0.0)                       
#>  yaml             2.2.1   2020-02-01 [1] CRAN (R 4.0.0)                       
#> 
#> [1] /Library/Frameworks/R.framework/Versions/4.0/Resources/library

How can I fix it? It just doesn't work "outside of reprex".

#9

Probably because you are loading other packages. reprex creates a clean environment and only loads the packages specified -- in this case, dplyr, feasts (and fabletools is loaded by feasts). When you run it outside of reprex, you must be loading some other packages that are causing problems.

1 Like
#10

Ok, I founded it. I test each of the packages I load, one by one, to try to find which of the package cause this problem.

it's dlookr: https://cran.r-project.org/web/packages/dlookr/index.html

I use it to do data diagnosis. I will stop loading it. Do you have any suggestion of package that could do an easy data diagnosis?

Thank you so much for your kind help!

#11

Thanks for finding the offending package. I've created an issue for identifying the conflict between feasts and dlookr: https://github.com/tidyverts/feasts/issues/106

1 Like
#12

This topic was automatically closed 7 days after the last reply. New replies are no longer allowed.

#3

It didn't worked.

I am now using fable version 0.2.1, fabletools version 0.2.0, feasts version 0.1.3.

#5

This example does work for me:

library(feasts)
#> Loading required package: fabletools
tsibbledata::vic_elec %>% ACF(Temperature)
#> # A tsibble: 47 x 2 [30m]
#>      lag   acf
#>    <lag> <dbl>
#>  1   30m 0.994
#>  2   60m 0.982
#>  3   90m 0.967
#>  4  120m 0.948
#>  5  150m 0.925
#>  6  180m 0.901
#>  7  210m 0.873
#>  8  240m 0.845
#>  9  270m 0.815
#> 10  300m 0.785
#> # … with 37 more rows

Created on 2020-06-12 by the reprex package (v0.3.0)

Session info 
devtools::session_info()
#> ─ Session info ───────────────────────────────────────────────────────────────
#>  setting  value                       
#>  version  R version 4.0.1 (2020-06-06)
#>  os       Ubuntu 20.04 LTS            
#>  system   x86_64, linux-gnu           
#>  ui       X11                         
#>  language en_AU:en                    
#>  collate  en_AU.UTF-8                 
#>  ctype    en_AU.UTF-8                 
#>  tz       Australia/Melbourne         
#>  date     2020-06-12                  
#> 
#> ─ Packages ───────────────────────────────────────────────────────────────────
#>  package        * version    date       lib
#>  anytime          0.3.7      2020-01-20 [1]
#>  assertthat       0.2.1      2019-03-21 [1]
#>  backports        1.1.7      2020-05-13 [1]
#>  callr            3.4.3      2020-03-28 [1]
#>  cli              2.0.2      2020-02-28 [1]
#>  colorspace       1.4-1      2019-03-18 [1]
#>  crayon           1.3.4.9000 2020-05-18 [1]
#>  desc             1.2.0      2018-05-01 [1]
#>  devtools         2.3.0      2020-04-10 [1]
#>  digest           0.6.25     2020-02-23 [1]
#>  distributional   0.1.0.9000 2020-06-11 [1]
#>  dplyr            1.0.0      2020-05-29 [1]
#>  ellipsis         0.3.1      2020-05-15 [1]
#>  evaluate         0.14       2019-05-28 [1]
#>  fabletools     * 0.2.0      2020-06-12 [1]
#>  fansi            0.4.1      2020-01-08 [1]
#>  farver           2.0.3      2020-01-16 [1]
#>  feasts         * 0.1.3      2020-03-18 [1]
#>  fs               1.4.1      2020-04-04 [1]
#>  generics         0.0.2      2018-11-29 [1]
#>  ggplot2          3.3.1      2020-05-28 [1]
#>  glue             1.4.1      2020-05-13 [1]
#>  gtable           0.3.0      2019-03-25 [1]
#>  highr            0.8        2019-03-20 [1]
#>  htmltools        0.4.0.9003 2020-05-24 [1]
#>  knitr            1.28.7     2020-06-11 [1]
#>  lifecycle        0.2.0      2020-03-06 [1]
#>  lubridate        1.7.8      2020-04-06 [1]
#>  magrittr         1.5        2014-11-22 [1]
#>  memoise          1.1.0      2017-04-21 [1]
#>  munsell          0.5.0      2018-06-12 [1]
#>  pillar           1.4.4      2020-05-05 [1]
#>  pkgbuild         1.0.8      2020-05-07 [1]
#>  pkgconfig        2.0.3      2019-09-22 [1]
#>  pkgload          1.1.0      2020-05-29 [1]
#>  prettyunits      1.1.1      2020-01-24 [1]
#>  processx         3.4.2      2020-02-09 [1]
#>  ps               1.3.3      2020-05-08 [1]
#>  purrr            0.3.4      2020-04-17 [1]
#>  R6               2.4.1      2019-11-12 [1]
#>  Rcpp             1.0.4.6    2020-04-09 [1]
#>  remotes          2.1.1      2020-02-15 [1]
#>  rlang            0.4.6      2020-05-02 [1]
#>  rmarkdown        2.2.3      2020-06-11 [1]
#>  rprojroot        1.3-2      2018-01-03 [1]
#>  scales           1.1.1      2020-05-11 [1]
#>  sessioninfo      1.1.1      2018-11-05 [1]
#>  stringi          1.4.6      2020-02-17 [1]
#>  stringr          1.4.0      2019-02-10 [1]
#>  testthat         2.3.2      2020-03-02 [1]
#>  tibble           3.0.1      2020-04-20 [1]
#>  tidyr            1.1.0      2020-05-20 [1]
#>  tidyselect       1.1.0      2020-05-11 [1]
#>  tsibble          0.9.0      2020-06-04 [1]
#>  tsibbledata      0.2.0      2020-06-04 [1]
#>  usethis          1.6.1      2020-04-29 [1]
#>  utf8             1.1.4      2018-05-24 [1]
#>  vctrs            0.3.1.9000 2020-06-09 [1]
#>  withr            2.2.0      2020-04-20 [1]
#>  xfun             0.14       2020-05-20 [1]
#>  yaml             2.2.1      2020-02-01 [1]
#>  source                                           
#>  CRAN (R 4.0.0)                                   
#>  CRAN (R 4.0.0)                                   
#>  RSPM (R 4.0.0)                                   
#>  RSPM (R 4.0.0)                                   
#>  CRAN (R 4.0.0)                                   
#>  CRAN (R 4.0.0)                                   
#>  Github (r-lib/crayon@dcf6d44)                    
#>  CRAN (R 4.0.0)                                   
#>  RSPM (R 4.0.0)                                   
#>  CRAN (R 4.0.0)                                   
#>  Github (mitchelloharawild/distributional@48a17b9)
#>  RSPM (R 4.0.0)                                   
#>  RSPM (R 4.0.0)                                   
#>  CRAN (R 4.0.0)                                   
#>  Github (tidyverts/fabletools@4f7738b)            
#>  CRAN (R 4.0.0)                                   
#>  CRAN (R 4.0.0)                                   
#>  CRAN (R 4.0.1)                                   
#>  CRAN (R 4.0.0)                                   
#>  CRAN (R 4.0.0)                                   
#>  RSPM (R 4.0.0)                                   
#>  RSPM (R 4.0.0)                                   
#>  CRAN (R 4.0.0)                                   
#>  CRAN (R 4.0.0)                                   
#>  Github (rstudio/htmltools@984b39c)               
#>  Github (yihui/knitr@12219b1)                     
#>  CRAN (R 4.0.0)                                   
#>  CRAN (R 4.0.0)                                   
#>  CRAN (R 4.0.0)                                   
#>  CRAN (R 4.0.0)                                   
#>  CRAN (R 4.0.0)                                   
#>  CRAN (R 4.0.0)                                   
#>  CRAN (R 4.0.0)                                   
#>  CRAN (R 4.0.0)                                   
#>  RSPM (R 4.0.0)                                   
#>  CRAN (R 4.0.0)                                   
#>  CRAN (R 4.0.0)                                   
#>  RSPM (R 4.0.0)                                   
#>  CRAN (R 4.0.0)                                   
#>  CRAN (R 4.0.0)                                   
#>  CRAN (R 4.0.0)                                   
#>  CRAN (R 4.0.0)                                   
#>  RSPM (R 4.0.0)                                   
#>  Github (rstudio/rmarkdown@4ee96c8)               
#>  CRAN (R 4.0.0)                                   
#>  RSPM (R 4.0.0)                                   
#>  CRAN (R 4.0.0)                                   
#>  CRAN (R 4.0.0)                                   
#>  CRAN (R 4.0.0)                                   
#>  CRAN (R 4.0.0)                                   
#>  CRAN (R 4.0.0)                                   
#>  RSPM (R 4.0.0)                                   
#>  RSPM (R 4.0.0)                                   
#>  RSPM (R 4.0.0)                                   
#>  RSPM (R 4.0.0)                                   
#>  CRAN (R 4.0.0)                                   
#>  CRAN (R 4.0.0)                                   
#>  Github (r-lib/vctrs@24cd670)                     
#>  CRAN (R 4.0.0)                                   
#>  RSPM (R 4.0.0)                                   
#>  CRAN (R 4.0.0)                                   
#> 
#> [1] /home/robjhyndman/R/x86_64-pc-linux-gnu-library/4.0
#> [2] /usr/local/lib/R/site-library
#> [3] /usr/lib/R/library

Please provide your sessioninfo. I suggest using reprex::reprex(si=TRUE).

#6

here it goes:

Session info ──────────────────────────────────────────────────────────────────────────────────────────────────
 setting  value                       
 version  R version 4.0.1 (2020-06-06)
 os       macOS Catalina 10.15.5      
 system   x86_64, darwin17.0          
 ui       RStudio                     
 language (EN)                        
 collate  en_US.UTF-8                 
 ctype    en_US.UTF-8                 
 tz       America/Sao_Paulo           
 date     2020-06-12                  

─ Packages ──────────────────────────────────────────────────────────────────────────────────────────────────────
 package        * version  date       lib source                               
 abind            1.4-5    2016-07-21 [1] CRAN (R 4.0.0)                       
 acepack          1.4.1    2016-10-29 [1] CRAN (R 4.0.0)                       
 anytime          0.3.7    2020-01-20 [1] CRAN (R 4.0.0)                       
 assertthat       0.2.1    2019-03-21 [1] CRAN (R 4.0.0)                       
 backports        1.1.7    2020-05-13 [1] CRAN (R 4.0.0)                       
 base64enc        0.1-3    2015-07-28 [1] CRAN (R 4.0.0)                       
 bit              1.1-15.2 2020-02-10 [1] CRAN (R 4.0.0)                       
 bit64            0.9-7    2017-05-08 [1] CRAN (R 4.0.0)                       
 blob             1.2.1    2020-01-20 [1] CRAN (R 4.0.0)                       
 broom            0.5.6    2020-04-20 [1] CRAN (R 4.0.0)                       
 callr            3.4.3    2020-03-28 [1] CRAN (R 4.0.0)                       
 car              3.0-8    2020-05-21 [1] CRAN (R 4.0.0)                       
 carData          3.0-4    2020-05-22 [1] CRAN (R 4.0.0)                       
 cellranger       1.1.0    2016-07-27 [1] CRAN (R 4.0.0)                       
 checkmate        2.0.0    2020-02-06 [1] CRAN (R 4.0.0)                       
 chron            2.3-55   2020-02-02 [1] CRAN (R 4.0.0)                       
 class            7.3-17   2020-04-26 [1] CRAN (R 4.0.1)                       
 classInt         0.4-3    2020-04-07 [1] CRAN (R 4.0.0)                       
 cli              2.0.2    2020-02-28 [1] CRAN (R 4.0.0)                       
 cluster          2.1.0    2019-06-19 [1] CRAN (R 4.0.1)                       
 colorspace       1.4-1    2019-03-18 [1] CRAN (R 4.0.0)                       
 corrplot         0.84     2017-10-16 [1] CRAN (R 4.0.0)                       
 crayon           1.3.4    2017-09-16 [1] CRAN (R 4.0.0)                       
 crosstalk        1.1.0.1  2020-03-13 [1] CRAN (R 4.0.0)                       
 curl             4.3      2019-12-02 [1] CRAN (R 4.0.0)                       
 data.table       1.12.8   2019-12-09 [1] CRAN (R 4.0.0)                       
 DBI              1.1.0    2019-12-15 [1] CRAN (R 4.0.0)                       
 desc             1.2.0    2018-05-01 [1] CRAN (R 4.0.0)                       
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[1] /Library/Frameworks/R.framework/Versions/4.0/Resources/library
#7

There seems to be some extraneous packages in your session information.
Could you run this code using reprex::reprex(si = TRUE)?

library(feasts)
tsibbledata::vic_elec %>% ACF(Temperature)
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