I'm helping a student conect Rstudio to github using usethis::create_github_token() and gitcreds::gitcreds_set(). The token is created with all of the recommended scopes (repo, user, workflow, gist) and gets updated nominally by gitcreds.
However when we run usethis::gh_token_help() or git_sitrep() the "repo" scope disappears. Can't connect to github.
There is nothing in the .Renviron. Has anyone seen this? It looks like there is something blocking or modifying the PAT scope on the github end but I can't figure out what.