As of conda V.4.40 the correct way to put conda in the environment is no longer to add
...../conda/bin to your path. You are now supposed to source
<path to conda>/conda/etc/profile.d/conda.sh. This is a major change that was not well publicized.
In the past, I updated my path in RStudio to start with my conda path. What is the way to do it now?
I the past I put this in my .Rprofile:
Sys.setenv(PATH=paste0('/home/conda/bin:', Sys.getenv('PATH'))) library('reticulate')
I now added:
But when I try to use reticulate in RStudio, this happens:
> use_condaenv('microbiome') Error: Unable to find conda binary. Is Anaconda installed?
Note: In command-line R, it works fine. The only problem is in RStudio.