How to install "mapsnp" packages?

[amira_ndi]

Hi all!
I would like to install "mapsnp" packages
I run this,

if (!requireNamespace("BiocManager", quietly = TRUE)) + install.packages("BiocManager")
BiocManager::install("Gviz")
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TxDb.Hsapiens.UCSC.hg19.knownGene")
install.packages("~/mapsnp_pkg-master/mapsnp_0.1.tar.gz", repos = NULL, type = "source")

But it did not work. Any suggestion?
Please help!
I really need this soon

[andresrcs]

@amira_ndi

But it did not work. Any suggestion?

Can you please be more specific? What is the error message you get?

[amira_ndi]

Hi @andresrcs
this is he history in R console

[Workspace loaded from ~/.RData]

> if (!requireNamespace("BiocManager", quietly = TRUE)) 
+   install.packages("BiocManager")
> BiocManager::install("Gviz")
'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details

replacement repositories:
    CRAN: https://cran.rstudio.com/

Bioconductor version 3.13 (BiocManager 1.30.16), R 4.1.0 (2021-05-18)
Installation paths not writeable, unable to update packages
  path: C:/Program Files/R/R-4.1.0/library
  packages:
    lattice, Matrix, mgcv, nlme, survival
Old packages: 'cpp11', 'data.table', 'digest', 'ggsignif', 'hms', 'knitr', 'lifecycle', 'maptools', 'matrixStats', 'mime', 'openssl',
  'pillar', 'psych', 'R6', 'RcppArmadillo', 'readr', 'remotes', 'rmarkdown', 'stringi', 'tibble', 'tidyr', 'tinytex', 'vroom', 'xfun'
Update all/some/none? [a/s/n]: if (!requireNamespace("BiocManager", quietly = TRUE))
Update all/some/none? [a/s/n]:   install.packages("BiocManager")
Update all/some/none? [a/s/n]: BiocManager::install("TxDb.Hsapiens.UCSC.hg19.knownGene")
Update all/some/none? [a/s/n]: install.packages("~/mapsnp_pkg-master/mapsnp_0.1.tar.gz", repos = NULL, type = "source")
Update all/some/none? [a/s/n]: 

If I type library(mapsnp)
it will be like this

or whatever I type something, it will be displayed "update all/some/none? [a/s/n]:"

[andresrcs]

You are showing two problems here

@amira_ndi

Installation paths not writeable, unable to update packages
  path: C:/Program Files/R/R-4.1.0/library
 

For installing in this folder you need to run RStudio as "administrator"

@amira_ndi

Update all/some/none? [a/s/n]: if (!requireNamespace("BiocManager", quietly = TRUE))

Here the console prompt is asking a question, which you have to answer by typing "a", "s", or "n" but instead you are executing the install commands again.

[amira_ndi]

Yes, I have successfully installed it. Thank you