I am trying to perform pathway analysis with MetaboAnalystR,
I have performed the t-tests:
> mSet<-Ttests.Anal(mSet, F, 0.25, FALSE, TRUE)  "A total of 43 significant features were found."
However when I try to convert it to the input for mummichog I am getting the following warning:
Convert2Mummichog(mSet, rt = TRUE) Warning message: In Convert2Mummichog(mSet, rt = TRUE) : NAs introduced by coercion
Then, I get the following error:
> SetPeakFormat("mprt") > mSet<-UpdateInstrumentParameters(mSet, 5, "negative"); > mSet<-Read.PeakListData(mSet, "mummichog_input_2021-02-18.txt");  "mprt" > mSet<-SanityCheckMummichogData(mSet)  "NA values found in the uploaded data!"
Is anyone able to help me with this I cant find any solutions!