Hello.
I'm running a tool from the command line that utilizes Rscript. The tool required me to install the R packages: argparse, plotly and ggsci. No other dependency.
The problem is that after doing everything it requires, when I try to run the tool via command line (the ONLY way to run it is via command line), it generates the following :
R scripting front-end version 4.1.2 (2021-11-01)
── Attaching packages ────────────────────────────────────────────────────────── tidyverse 1.3.2 ──
✔ tibble 3.1.8 ✔ dplyr 1.0.10
✔ tidyr 1.2.1 ✔ stringr 1.4.1
✔ readr 2.1.3 ✔ forcats 0.5.2
✔ purrr 0.3.5
── Conflicts ───────────────────────────────────────────────────────────── tidyverse_conflicts() ──
✖ dplyr::filter() masks plotly::filter(), stats::filter()
✖ dplyr::lag() masks stats::lag()
Warning message:
In if (args$input == "auto") { :
the condition has length > 1 and only the first element will be used
`summarise()` has grouped output by 'file'. You can override using the `.groups` argument.
`summarise()` has grouped output by 'file', 'has_adapter'. You can override using the `.groups`
argument.
`summarise()` has grouped output by 'file', 'has_adapter'. You can override using the `.groups`
argument.
Warning message:
In min(adapter_lengths) : no non-missing arguments to min; returning Inf
No trace type specified:
Based on info supplied, a 'scatter' trace seems appropriate.
Read more about this trace type -> https://plotly.com/r/reference/#scatter
No trace type specified:
Based on info supplied, a 'scatter' trace seems appropriate.
Read more about this trace type -> https://plotly.com/r/reference/#scatter
No trace type specified:
Based on info supplied, a 'scatter' trace seems appropriate.
Read more about this trace type -> https://plotly.com/r/reference/#scatter
No trace type specified:
Based on info supplied, a 'scatter' trace seems appropriate.
Read more about this trace type -> https://plotly.com/r/reference/#scatter
Error in htmlwidgets::saveWidget(as_widget(p_all), outname) :
Saving a widget with selfcontained = TRUE requires pandoc. For details see:
https://github.com/rstudio/rmarkdown/blob/master/PANDOC.md
Execution halted
I'm using POP OS.