I did some basic 16s analysis in qiime2 and wanted to import the rooted-tree.qza file from qiime2 to Rstudio. This should be an easy and quick step, but I have been getting error:
Error in pilot_rooted - tree = read_qza("/Users/ar/Desktop/qiime2_2/pilot_rooted-tree.qza") : object 'pilot_rooted' not found
It looks very straightforward, but it is jus not working. I have doubled checked the input file path is all right. I am using Rstudio 1.1.463, and the qza file was generated by qiime2- 2019.1 version. Could anyone please let me know what is gong wrong? Thanks a lot!