install FishLife R package

reginakawirian · November 14, 2019, 8:23am

i'm using R studio for windows 32 bit. when i try to run package of FishLife, i can do that. how to solved this problem?

arihanth · November 14, 2019, 9:25am

please provide more details or if you have any error message

reginakawirian · November 14, 2019, 9:39am

install FishLife R package

devtools::install_github("james-thorson/FishLife")
Downloading GitHub repo james-thorson/FishLife@master
Error in utils::download.file(url, path, method = method, quiet = quiet, :
cannot open URL 'https://api.github.com/repos/james-thorson/FishLife/tarball/master'

load FishLife R package

library( FishLife )
Error in library(FishLife) : there is no package called ‘FishLife’

arihanth · November 14, 2019, 10:18am

try enabling TLS 1.2 in your internet options and then to install the package:

github.com/r-lib/remotes

"cannot open URL" with remotes::install_github()

opened 10:33PM - 30 Mar 18 UTC

closed 04:58PM - 23 Sep 18 UTC

wibeasley

I have a vanilla installation of Windows (no proxies or anything similar) where …`remotes::install_github("yihui/testit")` won't work (it fails similarly for many other packages that do and don't require compilation). I've tried the two most recent patched versions of R (3.4.3 and 3.4.4) and both the CRAN and GitHub master version of [remotes](https://github.com/r-lib/remotes) (the CRAN version predates [the most recent changes to install-github.R](https://github.com/r-lib/remotes/commit/424d3cf535b0895a560cb899687b35371d891481#diff-057b1ee0896b4a47b93a7936c4803ceb)). It's been throwing this error for at least a week. Furthermore, these same arrangements have been working fine on my other Windows machines. And working fine on this same machine with `devtools::install_github("yihui/testit")` . The error message is ```r > remotes::install_github("yihui/testit") Downloading GitHub repo yihui/testit@master Error in utils::download.file(url, path, method = download_method(), quiet = quiet, : cannot open URL 'https://api.github.com/repos/yihui/testit/zipball/master' ``` Stepping through after declaring `debug(utils::download.file)` leads to the following misbehaving line, and I don't have the skills to debug once it cross the R-C boundary. ```r .External(C_download, url, destfile, quiet, mode, cacheOK, method == "wininet") ``` I'm not seeing anything similar amoung the [18 SO hits](https://stackoverflow.com/search?q=download.file+install_github). Is this something I should ask SO about instead? I'm not that worried for my own case, because I can keep using `devtools::install_github()`, but as more people migrate to remotes, this corner case might cause more problems. <details> <summary>traceback</summary> ```r > traceback() 11: utils::download.file(url, path, method = download_method(), quiet = quiet, mode = "wb") 10: withCallingHandlers(expr, warning = function(w) invokeRestart("muffleWarning")) 9: suppressWarnings(status <- utils::download.file(url, path, method = download_method(), quiet = quiet, mode = "wb")) 8: base_download(real_url, path, quiet) 7: download(dest, src, auth_token = x$auth_token) 6: remote_download.github_remote(remote, quiet = quiet) 5: remote_download(remote, quiet = quiet) 4: FUN(X[[i]], ...) 3: vapply(remotes, install_remote, ..., FUN.VALUE = logical(1)) 2: install_remotes(remotes, ...) 1: remotes::install_github("yihui/testit") ``` </details> <details> <summary>session info</summary> ```r R version 3.4.4 Patched (2018-03-19 r74446) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows >= 8 x64 (build 9200) Matrix products: default locale: [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 LC_MONETARY=English_United States.1252 [4] LC_NUMERIC=C LC_TIME=English_United States.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] compiler_3.4.4 tools_3.4.4 yaml_2.1.18 remotes_1.1.1 ``` </details>

system · December 5, 2019, 10:31am

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