Hi
I am new to R and trying to update packages on Rstudio on MACOS Mojave 10.14, but it is giving me error. I cannot install any packages on Rstudio. Can you please help?
Rstudio was trying to update httpuv and this is what happened
- installing source package ‘httpuv’ ...
** package ‘httpuv’ successfully unpacked and MD5 sums checked
** libs
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c RcppExports-legacy.cpp -o RcppExports-legacy.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c RcppExports.cpp -o RcppExports.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c callback.cpp -o callback.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c callbackqueue.cpp -o callbackqueue.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c filedatasource-unix.cpp -o filedatasource-unix.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c filedatasource-win.cpp -o filedatasource-win.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c http.cpp -o http.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c httprequest.cpp -o httprequest.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c httpresponse.cpp -o httpresponse.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c httpuv.cpp -o httpuv.o
x86_64-apple-darwin13.4.0-clang -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c md5.c -o md5.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c mime.cpp -o mime.o
x86_64-apple-darwin13.4.0-clang -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c set_invalid_parameter.c -o set_invalid_parameter.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c socket.cpp -o socket.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c staticpath.cpp -o staticpath.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c thread.cpp -o thread.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c utils.cpp -o utils.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c uvutil.cpp -o uvutil.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c webapplication.cpp -o webapplication.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c websockets-base.cpp -o websockets-base.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c websockets-hixie76.cpp -o websockets-hixie76.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c websockets-hybi03.cpp -o websockets-hybi03.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c websockets-ietf.cpp -o websockets-ietf.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/anaconda3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I"/anaconda3/lib/R/library/Rcpp/include" -I"/anaconda3/lib/R/library/BH/include" -I"/anaconda3/lib/R/library/later/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/anaconda3/include -DSTRICT_R_HEADERS -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c websockets.cpp -o websockets.o
cp -p -f libuv/m4/lt_obsolete.m4 libuv/m4/lt~obsolete.m4
(cd libuv
&& touch aclocal.m4
&& touch -r aclocal.m4 configure Makefile.in
&& chmod +x configure
&& CC="x86_64-apple-darwin13.4.0-clang" CFLAGS="-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -I/anaconda3/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -fPIC " AR="x86_64-apple-darwin13.4.0-ar" RANLIB="x86_64-apple-darwin13.4.0-ranlib" LDFLAGS="-Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -Wl,-rpath,/anaconda3/lib -L/anaconda3/lib" ./configure "--quiet")
configure: error: in/private/var/folders/t1/ms74tl6j4hj0tkwhhn6hnpg80000gn/T/Rtmpb7jriu/R.INSTALL38ac13380fe6/httpuv/src/libuv': configure: error: C compiler cannot create executables Seeconfig.log' for more details
make: *** [Makevars:67: libuv/Makefile] Error 77
ERROR: compilation failed for package ‘httpuv’ - removing ‘/anaconda3/lib/R/library/httpuv’
- restoring previous ‘/anaconda3/lib/R/library/httpuv’
So it ios restoring back to previous version and when I try to install any package it gives me an error.
Please help.