Hi,
Installed haven succcessfully in Rstudio IDE. When I was deploying the Rmarkdown, I am getting failure for haven installation. Pasting the error below. Please someone help me on this topic.
[Connect] Bundle requested R version 4.0.0; using /opt/R/4.0.0/bin/R which has version 4.0.0
[Connect] 2021/06/07 16:58:18.118400142 arguments: /opt/R/4.0.0/bin/R --no-save -s -f /opt/rstudio-connect/R/packrat_restore.R
[Connect] 2021/06/07 16:58:21.844549222 Installing haven (2.4.1) ...
[Connect] 2021/06/07 16:58:22.092723070 curl: HTTP 200
[Connect] 2021/06/07 16:58:56.774032954 [1] "Command failed (1)\n\nFailed to run system command:\n\n\t'/opt/R/4.0.0/lib/R/bin/R' --vanilla CMD INSTALL --preclean '/opt/rstudio-connect/mnt/tmp/RtmpQrlvzO/packrat-install-10524f1a9766/haven' --library='/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0' --install-tests --no-docs --no-multiarch --no-demo \n\nThe command failed with output:\n* installing source package ‘haven’ ...\n** package ‘haven’ successfully unpacked and MD5 sums checked\n** using staged installation\n** libs\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c tagged_na.c -o tagged_na.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/readstat_parser.c -o reads
[Connect] tat/readstat_parser.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/readstat_bits.c -o readstat/readstat_bits.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/readstat_metadata.c -o readstat/readstat_metadata.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/readstat_io_unistd.c -o readstat/readstat_io_unistd.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2
[Connect] -c readstat/readstat_variable.c -o readstat/readstat_variable.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/readstat_writer.c -o readstat/readstat_writer.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/readstat_error.c -o readstat/readstat_error.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/readstat_convert.c -o readstat/readstat_convert.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -I
[Connect] readstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/CKHashTable.c -o readstat/CKHashTable.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/readstat_malloc.c -o readstat/readstat_malloc.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/readstat_value.c -o readstat/readstat_value.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/sas/readstat_xport_write.c -o readstat/sas/readstat_xport_write.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0
[Connect] /cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/sas/readstat_sas7bcat_read.c -o readstat/sas/readstat_sas7bcat_read.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/sas/readstat_sas7bdat_write.c -o readstat/sas/readstat_sas7bdat_write.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/sas/readstat_sas7bcat_write.c -o readstat/sas/readstat_sas7bcat_write.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/sas/ieee.c -o readstat/sas/ieee.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/i
[Connect] nclude" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/sas/readstat_xport_read.c -o readstat/sas/readstat_xport_read.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/sas/readstat_sas.c -o readstat/sas/readstat_sas.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/sas/readstat_sas_rle.c -o readstat/sas/readstat_sas_rle.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/sas/readstat_xport.c -o read
[Connect] stat/sas/readstat_xport.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/sas/readstat_sas7bdat_read.c -o readstat/sas/readstat_sas7bdat_read.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/spss/readstat_sav_compress.c -o readstat/spss/readstat_sav_compress.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/spss/readstat_spss_parse.c -o readstat/spss/readstat_spss_parse.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include'
[Connect] -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/spss/readstat_sav_read.c -o readstat/spss/readstat_sav_read.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/spss/readstat_por_read.c -o readstat/spss/readstat_por_read.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/spss/readstat_sav.c -o readstat/spss/readstat_sav.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/spss/readstat_zsav_compress.c -o readstat/spss/readstat_zsav_compress.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBU
[Connect] G -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/spss/readstat_sav_parse_timestamp.c -o readstat/spss/readstat_sav_parse_timestamp.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/spss/readstat_zsav_read.c -o readstat/spss/readstat_zsav_read.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/spss/readstat_sav_write.c -o readstat/spss/readstat_sav_write.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/spss
[Connect] /readstat_spss.c -o readstat/spss/readstat_spss.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/spss/readstat_por.c -o readstat/spss/readstat_por.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/spss/readstat_por_write.c -o readstat/spss/readstat_por_write.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/spss/readstat_zsav_write.c -o readstat/spss/readstat_zsav_write.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include'
[Connect] -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/spss/readstat_sav_parse.c -o readstat/spss/readstat_sav_parse.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/spss/readstat_por_parse.c -o readstat/spss/readstat_por_parse.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/stata/readstat_dta_read.c -o readstat/stata/readstat_dta_read.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/stata/readstat_dta.c -o readstat/stata/readstat_dta.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG
[Connect] -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/stata/readstat_dta_parse_timestamp.c -o readstat/stata/readstat_dta_parse_timestamp.o\ngcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/stata/readstat_dta_write.c -o readstat/stata/readstat_dta_write.o\ng++ -std=gnu++11 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c DfReader.cpp -o DfReader.o\ng++ -std=gnu++11 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c cpp11.cpp -o cpp11.o\ng++ -std=gnu++11 -I"/opt/R/4.0
[Connect] .0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c DfWriter.cpp -o DfWriter.o\ng++ -std=gnu++11 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c haven_types.cpp -o haven_types.o\ng++ -std=gnu++11 -shared -L/opt/R/4.0.0/lib/R/lib -L/usr/local/lib -o haven.so tagged_na.o readstat/readstat_parser.o readstat/readstat_bits.o readstat/readstat_metadata.o readstat/readstat_io_unistd.o readstat/readstat_variable.o readstat/readstat_writer.o readstat/readstat_error.o readstat/readstat_convert.o readstat/CKHashTable.o readstat/readstat_malloc.o readstat/readstat_value.o readstat/sas/readstat_xport_write.o readstat/sas/readstat_sas7bcat_read.o readstat/sas/readstat_sas7bdat_write.o readstat/sas/readstat_sas7bcat_write.o readstat/sas/ieee.o readstat/sas/read
[Connect] stat_xport_read.o readstat/sas/readstat_sas.o readstat/sas/readstat_sas_rle.o readstat/sas/readstat_xport.o readstat/sas/readstat_sas7bdat_read.o readstat/spss/readstat_sav_compress.o readstat/spss/readstat_spss_parse.o readstat/spss/readstat_sav_read.o readstat/spss/readstat_por_read.o readstat/spss/readstat_sav.o readstat/spss/readstat_zsav_compress.o readstat/spss/readstat_sav_parse_timestamp.o readstat/spss/readstat_zsav_read.o readstat/spss/readstat_sav_write.o readstat/spss/readstat_spss.o readstat/spss/readstat_por.o readstat/spss/readstat_por_write.o readstat/spss/readstat_zsav_write.o readstat/spss/readstat_sav_parse.o readstat/spss/readstat_por_parse.o readstat/stata/readstat_dta_read.o readstat/stata/readstat_dta.o readstat/stata/readstat_dta_parse_timestamp.o readstat/stata/readstat_dta_write.o DfReader.o cpp11.o DfWriter.o haven_types.o -lz -L/opt/R/4.0.0/lib/R/lib -lR\ninstalling to /opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/00LOCK-haven/00new/haven/libs\n** R\n** inst\n*
[Connect] * tests\n** byte-compile and prepare package for lazy loading\n** help\n*** installing help indices\n*** copying figures\n** building package indices\n** installing vignettes\n** testing if installed package can be loaded from temporary location\nError: package or namespace load failed for ‘haven’ in dyn.load(file, DLLpath = DLLpath, ...):\n unable to load shared object '/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/00LOCK-haven/00new/haven/libs/haven.so':\n /opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/00LOCK-haven/00new/haven/libs/haven.so: undefined symbol: libiconv\nError: loading failed\nExecution halted\nERROR: loading failed\n* removing ‘/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/haven’"
[Connect] 2021/06/07 16:58:56.780653909 Error: Command failed (1)
[Connect] 2021/06/07 16:58:56.780661495
[Connect] 2021/06/07 16:58:56.780689831 Failed to run system command:
[Connect] 2021/06/07 16:58:56.780690622
[Connect] 2021/06/07 16:58:56.780698757 '/opt/R/4.0.0/lib/R/bin/R' --vanilla CMD INSTALL --preclean '/opt/rstudio-connect/mnt/tmp/RtmpQrlvzO/packrat-install-10524f1a9766/haven' --library='/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0' --install-tests --no-docs --no-multiarch --no-demo
[Connect] 2021/06/07 16:58:56.780702327
[Connect] 2021/06/07 16:58:56.780709963 The command failed with output:
[Connect] 2021/06/07 16:58:56.780710649 * installing source package ‘haven’ ...
[Connect] 2021/06/07 16:58:56.780718740 ** package ‘haven’ successfully unpacked and MD5 sums checked
[Connect] 2021/06/07 16:58:56.780719602 ** using staged installation
[Connect] 2021/06/07 16:58:56.780727491 ** libs
[Connect] 2021/06/07 16:58:56.780728285 gcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c tagged_na.c -o tagged_na.o
[Connect] 2021/06/07 16:58:56.780737530 gcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/readstat_parser.c -o readstat/readstat_parser.o
[Connect] 2021/06/07 16:58:56.780738227 gcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/readstat_bits.c -o readstat/readstat_bits.o
[Connect] 2021/06/07 16:58:56.780745584 gcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/readstat_metadata.c -o readstat/readstat_metadata.o
[Connect] 2021/06/07 16:58:56.780746160 gcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/readstat_io_unistd.c -o readstat/readstat_io_unistd.o
[Connect] 2021/06/07 16:58:56.780760721 gcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/readstat_variable.c -o readstat/readstat_variable.o
[Connect] 2021/06/07 16:58:56.780765037 gcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/readstat_writer.c -o readstat/readstat_writer.o
[Connect] 2021/06/07 16:58:56.780782978 gcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/readstat_error.c -o readstat/readstat_error.o
[Connect] 2021/06/07 16:58:56.780784152 gcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/readstat_convert.c -o readstat/readstat_convert.o
[Connect] 2021/06/07 16:58:56.780799207 gcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/CKHashTable.c -o readstat/CKHashTable.o
[Connect] 2021/06/07 16:58:56.780803124 gcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/readstat_malloc.c -o readstat/readstat_malloc.o
[Connect] 2021/06/07 16:58:56.780818740 gcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/readstat_value.c -o readstat/readstat_value.o
[Connect] 2021/06/07 16:58:56.780820692 gcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/sas/readstat_xport_write.c -o readstat/sas/readstat_xport_write.o
[Connect] 2021/06/07 16:58:56.780837322 gcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/sas/readstat_sas7bcat_read.c -o readstat/sas/readstat_sas7bcat_read.o
[Connect] 2021/06/07 16:58:56.780839775 gcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/sas/readstat_sas7bdat_write.c -o readstat/sas/readstat_sas7bdat_write.o
[Connect] 2021/06/07 16:58:56.780855334 gcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/sas/readstat_sas7bcat_write.c -o readstat/sas/readstat_sas7bcat_write.o
[Connect] 2021/06/07 16:58:56.780856107 gcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/sas/ieee.c -o readstat/sas/ieee.o
[Connect] 2021/06/07 16:58:56.780863587 gcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/sas/readstat_xport_read.c -o readstat/sas/readstat_xport_read.o
[Connect] 2021/06/07 16:58:56.780864196 gcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/sas/readstat_sas.c -o readstat/sas/readstat_sas.o
[Connect] 2021/06/07 16:58:56.780871499 gcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/sas/readstat_sas_rle.c -o readstat/sas/readstat_sas_rle.o
[Connect] 2021/06/07 16:58:56.780872082 gcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/sas/readstat_xport.c -o readstat/sas/readstat_xport.o
[Connect] 2021/06/07 16:58:56.780879541 gcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/sas/readstat_sas7bdat_read.c -o readstat/sas/readstat_sas7bdat_read.o
[Connect] 2021/06/07 16:58:56.780880119 gcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/spss/readstat_sav_compress.c -o readstat/spss/readstat_sav_compress.o
[Connect] 2021/06/07 16:58:56.780889453 gcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/spss/readstat_spss_parse.c -o readstat/spss/readstat_spss_parse.o
[Connect] 2021/06/07 16:58:56.780890027 gcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/spss/readstat_sav_read.c -o readstat/spss/readstat_sav_read.o
[Connect] 2021/06/07 16:58:56.780899158 gcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/spss/readstat_por_read.c -o readstat/spss/readstat_por_read.o
[Connect] 2021/06/07 16:58:56.780899724 gcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/spss/readstat_sav.c -o readstat/spss/readstat_sav.o
[Connect] 2021/06/07 16:58:56.780916181 gcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/spss/readstat_zsav_compress.c -o readstat/spss/readstat_zsav_compress.o
[Connect] 2021/06/07 16:58:56.780920376 gcc -std=gnu99 -I"/opt/R/4.0.0/lib/R/include" -DNDEBUG -I'/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLI
[Connect] 2021/06/07 16:58:56.780934653
[Connect] 2021/06/07 16:58:56.780938487 Unable to fully restore the R packages associated with this deployment.
[Connect] 2021/06/07 16:58:56.780952239 Please review the preceding messages to determine which package
[Connect] 2021/06/07 16:58:56.780954759 encountered installation difficulty and the cause of the failure.
[Connect] 2021/06/07 18:58:56.776579433 Error code: r-missing-system-library
[Connect] An R package cannot be installed because a required system-level dependency is missing.
[Connect] Possible causes:
[Connect] * An R package requires a system-level dependency, such as a library or executable, which is not installed on the Connect server.
[Connect]
[Connect] Possible solutions:
[Connect] * Install the required package using your system package manager (such as apt or yum).
[Connect] * If you have RStudio Package Manager, open the information page for the affected R package. Installation instructions for the package's system-level dependencies are included under the Install System Prerequisites heading
[Connect] * Otherwise, use the messages in the deployment log to identify which system package you need to install.
[Connect]
[Connect] References:
dependencies
[Connect]
[Connect] 2021/06/07 18:58:56.776579433 Additional data:
[Connect] RequiredFile: '/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/00LOCK-haven/00new/haven/libs/haven.so'
[Connect] Package: 'haven'
[Connect] PackageVersion: '2.4.1'
[Connect] Found in the following log entry:
[Connect] * tests\n** byte-compile and prepare package for lazy loading\n** help\n*** installing help indices\n*** copying figures\n** building package indices\n** installing vignettes\n** testing if installed package can be loaded from temporary location\nError: package or namespace load failed for ‘haven’ in dyn.load(file, DLLpath = DLLpath, ...):\n unable to load shared object '/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/00LOCK-haven/00new/haven/libs/haven.so':\n /opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/00LOCK-haven/00new/haven/libs/haven.so: undefined symbol: libiconv\nError: loading failed\nExecution halted\nERROR: loading failed\n* removing ‘/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.0.0/haven’"
[Connect] Build error: An R package cannot be installed because a required system-level dependency is missing. (r-missing-system-library)
Document deployment failed with error: An R package cannot be installed because a required system-level dependency is missing. (r-missing-system-library)
