Hi Guys,
I am very new in r for analysis of nanostring. I followed a tutorial for analysing nanostrinf data. But, I did not understand why the script following doesn't work. What is your thought please?
Thank you in advance.
Nazim
> demoData <-
+ readNanoStringGeoMxSet(dccFiles = DCCFiles,
+ pkcFiles = PKCFiles,
+ phenoDataFile = SampleAnnotationFile,
+ phenoDataSheet = "Template",
+ phenoDataDccColName = "Sample_ID",
+ protocolDataColNames = c("aoi", "roi"),
+ experimentDataColNames = c("panel"))
Error in readNanoStringGeoMxSet(dccFiles = DCCFiles, pkcFiles = PKCFiles, :
lazy-load database '/home/one/R/x86_64-pc-linux-gnu-library/4.1/readxl/R/readxl.rdb' is corrupt
In addition: Warning messages:
1: In readNanoStringGeoMxSet(dccFiles = DCCFiles, pkcFiles = PKCFiles, :
restarting interrupted promise evaluation
2: In readNanoStringGeoMxSet(dccFiles = DCCFiles, pkcFiles = PKCFiles, :
internal error -3 in R_decompress1
> demoData <-readNanoStringGeoMxSet(dccFiles = DCCFiles,
+ pkcFiles = PKCFiles,
+ phenoDataFile = SampleAnnotationFile,
+ phenoDataSheet = "Template",
+ phenoDataDccColName = "Sample_ID",
+ protocolDataColNames = c("aoi", "roi"),
+ experimentDataColNames = c("panel"))
Error in readNanoStringGeoMxSet(dccFiles = DCCFiles, pkcFiles = PKCFiles, :
lazy-load database '/home/one/R/x86_64-pc-linux-gnu-library/4.1/readxl/R/readxl.rdb' is corrupt
In addition: Warning messages:
1: In readNanoStringGeoMxSet(dccFiles = DCCFiles, pkcFiles = PKCFiles, :
restarting interrupted promise evaluation
2: In readNanoStringGeoMxSet(dccFiles = DCCFiles, pkcFiles = PKCFiles, :
internal error -3 in R_decompress1