I've seen the issue in a number of other threads but when I try to install the Bioconductor package
iSEE, a lof of packages fail to install with a "Killed" message.
For instance, after several rounds of installation:
> BiocManager::install("iSEE") Bioconductor version 3.8 (BiocManager 1.30.4), R 3.5.2 (2018-12-20) Installing package(s) 'iSEE' trying URL 'https://bioconductor.org/packages/3.8/bioc/src/contrib/iSEE_1.2.1.tar.gz' Content type 'application/x-gzip' length 7591401 bytes (7.2 MB) ================================================== downloaded 7.2 MB * installing *source* package ‘iSEE’ ... ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded Killed The downloaded source packages are in ‘/tmp/RtmpzaBUiq/downloaded_packages’
I haven't logged the earlier installation outputs, but a number of other packages triggered this "Killed" message, without interrupting the overall installation process. Maybe there are some broken / semi-installed packages now, but I have no clue how to identify the source of the issue from here.