I am trying to install RStudio on Linux Redhat. Since I don't have root access, I have to build from source. I followed closely the instructions in "Install". After running "make install", I hit the following errors about 40% through when it's building "diagnostics" whatever that is.
**I googled the errors, seeing that a lot of them are some "undefined reference" errors. One common suggestion is to add the macro -D_GLIBCXX_USE_CXX11_ABI=0 to the command line used to compile it, **
**Apparently, this commonly happens when linking to a third-party library that was compiled with an older version of GCC" (https://stackoverflow.com/questions/40705852/undefined-reference-to-std-cxx11basic-string-in-boost-on-travis-ci, **
This did not fix the problem. This is really frustrating. Can someone shed some light on this. Much appreciated!
[ 39%] Building CXX object src/cpp/r/CMakeFiles/rstudio-r.dir/session/graphics/RGraphicsUtils.cpp.o
[ 39%] Building CXX object src/cpp/r/CMakeFiles/rstudio-r.dir/session/graphics/RGraphicsDevDesc.cpp.o
[ 39%] Building CXX object src/cpp/r/CMakeFiles/rstudio-r.dir/session/graphics/RGraphicsHandler.cpp.o
[ 40%] Building CXX object src/cpp/r/CMakeFiles/rstudio-r.dir/session/graphics/RShadowPngGraphicsHandler.cpp.o
[ 40%] Building CXX object src/cpp/r/CMakeFiles/rstudio-r.dir/session/REmbeddedPosix.cpp.o
[ 40%] Linking CXX static library librstudio-r.a
[ 40%] Built target rstudio-r
Scanning dependencies of target diagnostics
[ 40%] Building CXX object src/cpp/diagnostics/CMakeFiles/diagnostics.dir/DiagnosticsMain.cpp.o
[ 40%] Linking CXX executable diagnostics
../core/librstudio-core.a(PosixSystem.cpp.o): In function bool rstudio::core::regex_utils::match<__gnu_cxx::__normal_iterator<char const*, std::string>, boost::match_results<__gnu_cxx::__normal_iterator<char const*, std::string>, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::string> > > >, boost::basic_regex<char, boost::regex_traits<char, boost::cpp_regex_traits<char> > > >(__gnu_cxx::__normal_iterator<char const*, std::string>, __gnu_cxx::__normal_iterator<char const*, std::string>, boost::match_results<__gnu_cxx::__normal_iterator<char const*, std::string>, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::string> > > >&, boost::basic_regex<char, boost::regex_traits<char, boost::cpp_regex_traits<char> > > const&, boost::regex_constants::_match_flags)': PosixSystem.cpp:(.text._ZN7rstudio4core11regex_utils5matchIN9__gnu_cxx17__normal_iteratorIPKcSsEEN5boost13match_resultsIS7_SaINS8_9sub_matchIS7_EEEEENS8_11basic_regexIcNS8_12regex_traitsIcNS8_16cpp_regex_traitsIcEEEEEEEEbT_SK_RT0_RKT1_NS8_15regex_constants12_match_flagsE[_ZN7rstudio4core11regex_utils5matchIN9__gnu_cxx17__normal_iteratorIPKcSsEEN5boost13match_resultsIS7_SaINS8_9sub_matchIS7_EEEEENS8_11basic_regexIcNS8_12regex_traitsIcNS8_16cpp_regex_traitsIcEEEEEEEEbT_SK_RT0_RKT1_NS8_15regex_constants12_match_flagsE]+0xfc): undefined reference toboost::re_detail_106501::perl_matcher<__gnu_cxx::__normal_iterator<char const*, std::string>, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::string> > >, boost::regex_traits<char, boost::cpp_regex_traits > >::construct_init(boost::basic_regex<char, boost::regex_traits<char, boost::cpp_regex_traits > > const&, boost::regex_constants::_match_flags)'
../core/librstudio-core.a(Backtrace.cpp.o): In function char const* boost::re_detail_106501::re_is_set_member<char const*, char, boost::regex_traits<char, boost::cpp_regex_traits<char> >, unsigned int>(char const*, char const*, boost::re_detail_106501::re_set_long<unsigned int> const*, boost::re_detail_106501::regex_data<char, boost::regex_traits<char, boost::cpp_regex_traits<char> > > const&, bool)': Backtrace.cpp:(.text._ZN5boost16re_detail_10650116re_is_set_memberIPKccNS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEjEET_S8_S8_PKNS0_11re_set_longIT2_EERKNS0_10regex_dataIT0_T1_EEb[_ZN5boost16re_detail_10650116re_is_set_memberIPKccNS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEjEET_S8_S8_PKNS0_11re_set_longIT2_EERKNS0_10regex_dataIT0_T1_EEb]+0x166): undefined reference toboost::re_detail_106501::cpp_regex_traits_implementation::transform_primary(char const*, char const*) const'
Backtrace.cpp:(.text._ZN5boost16re_detail_10650116re_is_set_memberIPKccNS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEjEET_S8_S8_PKNS0_11re_set_longIT2_EERKNS0_10regex_dataIT0_T1_EEb[_ZN5boost16re_detail_10650116re_is_set_memberIPKccNS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEjEET_S8_S8_PKNS0_11re_set_longIT2_EERKNS0_10regex_dataIT0_T1_EEb]+0x39a): undefined reference to boost::re_detail_106501::cpp_regex_traits_implementation<char>::transform(char const*, char const*) const' ../core/librstudio-core.a(StringUtils.cpp.o): In functionrstudio::core::string_utils::extractCommentHeader(std::string const&, std::string const&, std::string*)':
StringUtils.cpp:(.text+0x2266): undefined reference to boost::re_detail_106501::perl_matcher<__gnu_cxx::__normal_iterator<char const*, std::string>, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::string> > >, boost::regex_traits<char, boost::cpp_regex_traits<char> > >::construct_init(boost::basic_regex<char, boost::regex_traits<char, boost::cpp_regex_traits<char> > > const&, boost::regex_constants::_match_flags)' ../core/librstudio-core.a(StringUtils.cpp.o): In functionbool boost::regex_search<__gnu_cxx::__normal_iterator<char const*, std::string>, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::string> > >, char, boost::regex_traits<char, boost::cpp_regex_traits > >(__gnu_cxx::__normal_iterator<char const*, std::string>, __gnu_cxx::__normal_iterator<char const*, std::string>, boost::match_results<__gnu_cxx::__normal_iterator<char const*, std::string>, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::string> > > >&, boost::basic_regex<char, boost::regex_traits<char, boost::cpp_regex_traits > > const&, boost::regex_constants::_match_flags, __gnu_cxx::__normal_iterator<char const*, std::string>)':
StringUtils.cpp:(.text.ZN5boost12regex_searchIN9__gnu_cxx17__normal_iteratorIPKcSsEESaINS_9sub_matchIS5_EEEcNS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEEEbT_SD_RNS_13match_resultsISD_T0_EERKNS_11basic_regexIT1_T2_EENS_15regex_constants12_match_flagsESD[ZN5boost12regex_searchIN9__gnu_cxx17__normal_iteratorIPKcSsEESaINS_9sub_matchIS5_EEEcNS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEEEbT_SD_RNS_13match_resultsISD_T0_EERKNS_11basic_regexIT1_T2_EENS_15regex_constants12_match_flagsESD]+0x16a): undefined reference to boost::re_detail_106501::perl_matcher<__gnu_cxx::__normal_iterator<char const*, std::string>, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::string> > >, boost::regex_traits<char, boost::cpp_regex_traits<char> > >::construct_init(boost::basic_regex<char, boost::regex_traits<char, boost::cpp_regex_traits<char> > > const&, boost::regex_constants::_match_flags)' ../core/librstudio-core.a(StringUtils.cpp.o): In functionbool boost::regex_search<__gnu_cxx::__normal_iterator<char const*, std::string>, char, boost::regex_traits<char, boost::cpp_regex_traits > >(__gnu_cxx::__normal_iterator<char const*, std::string>, __gnu_cxx::__normal_iterator<char const*, std::string>, boost::basic_regex<char, boost::regex_traits<char, boost::cpp_regex_traits > > const&, boost::regex_constants::_match_flags)':
StringUtils.cpp:(.text._ZN5boost12regex_searchIN9__gnu_cxx17__normal_iteratorIPKcSsEEcNS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEEEbT_SA_RKNS_11basic_regexIT0_T1_EENS_15regex_constants12_match_flagsE[_ZN5boost12regex_searchIN9__gnu_cxx17__normal_iteratorIPKcSsEEcNS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEEEbT_SA_RKNS_11basic_regexIT0_T1_EENS_15regex_constants12_match_flagsE]+0x199): undefined reference to boost::re_detail_106501::perl_matcher<__gnu_cxx::__normal_iterator<char const*, std::string>, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::string> > >, boost::regex_traits<char, boost::cpp_regex_traits<char> > >::construct_init(boost::basic_regex<char, boost::regex_traits<char, boost::cpp_regex_traits<char> > > const&, boost::regex_constants::_match_flags)' ../core/librstudio-core.a(StringUtils.cpp.o): In function__gnu_cxx::__normal_iterator<char const*, std::string> boost::re_detail_106501::re_is_set_member<__gnu_cxx::__normal_iterator<char const*, std::string>, char, boost::regex_traits<char, boost::cpp_regex_traits >, unsigned int>(__gnu_cxx::__normal_iterator<char const*, std::string>, __gnu_cxx::__normal_iterator<char const*, std::string>, boost::re_detail_106501::re_set_long const*, boost::re_detail_106501::regex_data<char, boost::regex_traits<char, boost::cpp_regex_traits > > const&, bool)':
StringUtils.cpp:(.text._ZN5boost16re_detail_10650116re_is_set_memberIN9__gnu_cxx17__normal_iteratorIPKcSsEEcNS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEjEET_SB_SB_PKNS0_11re_set_longIT2_EERKNS0_10regex_dataIT0_T1_EEb[_ZN5boost16re_detail_10650116re_is_set_memberIN9__gnu_cxx17__normal_iteratorIPKcSsEEcNS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEjEET_SB_SB_PKNS0_11re_set_longIT2_EERKNS0_10regex_dataIT0_T1_EEb]+0x17d): undefined reference to boost::re_detail_106501::cpp_regex_traits_implementation<char>::transform_primary(char const*, char const*) const' StringUtils.cpp:(.text._ZN5boost16re_detail_10650116re_is_set_memberIN9__gnu_cxx17__normal_iteratorIPKcSsEEcNS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEjEET_SB_SB_PKNS0_11re_set_longIT2_EERKNS0_10regex_dataIT0_T1_EEb[_ZN5boost16re_detail_10650116re_is_set_memberIN9__gnu_cxx17__normal_iteratorIPKcSsEEcNS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEjEET_SB_SB_PKNS0_11re_set_longIT2_EERKNS0_10regex_dataIT0_T1_EEb]+0x3ae): undefined reference toboost::re_detail_106501::cpp_regex_traits_implementation::transform(char const*, char const*) const'
../core/librstudio-core.a(StringUtils.cpp.o): In function boost::re_detail_106501::perl_matcher<__gnu_cxx::__normal_iterator<char const*, std::string>, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::string> > >, boost::regex_traits<char, boost::cpp_regex_traits<char> > >::match_prefix()': StringUtils.cpp:(.text._ZN5boost16re_detail_10650112perl_matcherIN9__gnu_cxx17__normal_iteratorIPKcSsEESaINS_9sub_matchIS6_EEENS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEE12match_prefixEv[_ZN5boost16re_detail_10650112perl_matcherIN9__gnu_cxx17__normal_iteratorIPKcSsEESaINS_9sub_matchIS6_EEENS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEE12match_prefixEv]+0x16c): undefined reference toboost::match_results<__gnu_cxx::__normal_iterator<char const*, std::string>, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::string> > > >::maybe_assign(boost::match_results<__gnu_cxx::__normal_iterator<char const*, std::string>, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::string> > > > const&)'
../core/librstudio-core.a(StringUtils.cpp.o): In function boost::re_detail_106501::perl_matcher<__gnu_cxx::__normal_iterator<char const*, std::string>, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::string> > >, boost::regex_traits<char, boost::cpp_regex_traits<char> > >::match_match()': StringUtils.cpp:(.text._ZN5boost16re_detail_10650112perl_matcherIN9__gnu_cxx17__normal_iteratorIPKcSsEESaINS_9sub_matchIS6_EEENS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEE11match_matchEv[_ZN5boost16re_detail_10650112perl_matcherIN9__gnu_cxx17__normal_iteratorIPKcSsEESaINS_9sub_matchIS6_EEENS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEE11match_matchEv]+0x34c): undefined reference toboost::match_results<__gnu_cxx::__normal_iterator<char const*, std::string>, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::string> > > >::maybe_assign(boost::match_results<__gnu_cxx::__normal_iterator<char const*, std::string>, std::allocator<boost::sub_match<__gnu_cxx::__normal_iterator<char const*, std::string> > > > const&)'
/usr/local/lib/libboost_iostreams.so: undefined reference to std::ios_base::failure[abi:cxx11]::what() const@GLIBCXX_3.4.21' /usr/local/lib/libboost_iostreams.so: undefined reference tostd::iostream_category()@GLIBCXX_3.4.21'
/usr/local/lib/libboost_program_options.so: undefined reference to std::__cxx11::basic_string<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> >::_M_mutate(unsigned long, unsigned long, wchar_t const*, unsigned long)@GLIBCXX_3.4.21' /usr/local/lib/libboost_program_options.so: undefined reference toVTT for std::__cxx11::basic_stringstream<char, std::char_traits, std::allocator >@GLIBCXX_3.4.21'
/usr/local/lib/libboost_filesystem.so: undefined reference to std::__throw_out_of_range_fmt(char const*, ...)@GLIBCXX_3.4.20' /usr/local/lib/libboost_filesystem.so: undefined reference tostd::__cxx11::basic_string<char, std::char_traits, std::allocator >::find_first_not_of(char const*, unsigned long, unsigned long) const@GLIBCXX_3.4.21'
/usr/local/lib/libboost_iostreams.so: undefined reference to std::ios_base::failure[abi:cxx11]::~failure()@GLIBCXX_3.4.21' /usr/local/lib/libboost_program_options.so: undefined reference tostd::logic_error::logic_error(char const*)@GLIBCXX_3.4.21'
/usr/local/lib/libboost_iostreams.so: undefined reference to std::__cxx11::basic_string<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> >::_M_assign(std::__cxx11::basic_string<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> > const&)@GLIBCXX_3.4.21' /usr/local/lib/libboost_iostreams.so: undefined reference tostd::ios_base::failure[abi:cxx11]::failure(char const*, std::error_code const&)@GLIBCXX_3.4.21'
/usr/local/lib/libboost_date_time.so: undefined reference to std::__cxx11::basic_string<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> >::_M_create(unsigned long&, unsigned long)@GLIBCXX_3.4.21' /usr/local/lib/libboost_filesystem.so: undefined reference tostd::__cxx11::basic_string<char, std::char_traits, std::allocator >::~basic_string()@GLIBCXX_3.4.21'
/usr/local/lib/libboost_chrono.so: undefined reference to typeinfo for std::_V2::error_category@GLIBCXX_3.4.21' /usr/local/lib/libboost_filesystem.so: undefined reference tostd::__cxx11::basic_string<char, std::char_traits, std::allocator >::_M_erase(unsigned long, unsigned long)@GLIBCXX_3.4.21'
/usr/local/lib/libboost_regex.so: undefined reference to std::__cxx11::collate<char> const& std::use_facet<std::__cxx11::collate<char> >(std::locale const&)@GLIBCXX_3.4.21' /usr/local/lib/libboost_regex.so: undefined reference tostd::__cxx11::basic_stringstream<char, std::char_traits, std::allocator >::basic_stringstream(std::_Ios_Openmode)@GLIBCXX_3.4.21'
/usr/local/lib/libboost_regex.so: undefined reference to std::__cxx11::numpunct<wchar_t> const& std::use_facet<std::__cxx11::numpunct<wchar_t> >(std::locale const&)@GLIBCXX_3.4.21' /usr/local/lib/libboost_program_options.so: undefined reference tostd::__cxx11::basic_string<char, std::char_traits, std::allocator >::find_last_not_of(char const*, unsigned long, unsigned long) const@GLIBCXX_3.4.21'
/usr/local/lib/libboost_filesystem.so: undefined reference to std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace_aux(unsigned long, unsigned long, unsigned long, char)@GLIBCXX_3.4.21' /usr/local/lib/libboost_date_time.so: undefined reference tostd::__cxx11::basic_string<char, std::char_traits, std::allocator >::_M_assign(std::__cxx11::basic_string<char, std::char_traits, std::allocator > const&)@GLIBCXX_3.4.21'
/usr/local/lib/libboost_iostreams.so: undefined reference to typeinfo for std::ios_base::failure[abi:cxx11]@GLIBCXX_3.4.21' /usr/local/lib/libboost_regex.so: undefined reference tostd::__cxx11::messages<wchar_t> const& std::use_facet<std::__cxx11::messages<wchar_t> >(std::locale const&)@GLIBCXX_3.4.21'
/usr/local/lib/libboost_chrono.so: undefined reference to std::runtime_error::runtime_error(std::runtime_error const&)@GLIBCXX_3.4.21' /usr/local/lib/libboost_program_options.so: undefined reference tostd::__cxx11::basic_stringstream<char, std::char_traits, std::allocator >::~basic_stringstream()@GLIBCXX_3.4.21'
/usr/local/lib/libboost_program_options.so: undefined reference to std::basic_istream<wchar_t, std::char_traits<wchar_t> >& std::getline<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> >(std::basic_istream<wchar_t, std::char_traits<wchar_t> >&, std::__cxx11::basic_string<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> >&, wchar_t)@GLIBCXX_3.4.21' /usr/local/lib/libboost_date_time.so: undefined reference tostd::__cxx11::basic_string<char, std::char_traits, std::allocator >::compare(char const*) const@GLIBCXX_3.4.21'
/usr/local/lib/libboost_regex.so: undefined reference to std::runtime_error::runtime_error(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)@GLIBCXX_3.4.21' /usr/local/lib/libboost_chrono.so: undefined reference tostd::_V2::error_category::~error_category()@GLIBCXX_3.4.21'
/usr/local/lib/libboost_iostreams.so: undefined reference to std::ios_base::failure[abi:cxx11]::failure(char const*, std::error_code const&)@GLIBCXX_3.4.21' /usr/local/lib/libboost_chrono.so: undefined reference tostd::_V2::error_category::_M_messageabi:cxx11 const@GLIBCXX_3.4.21'
/usr/local/lib/libboost_thread.so: undefined reference to vtable for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >@GLIBCXX_3.4.21' /usr/local/lib/libboost_chrono.so: undefined reference tostd::__cxx11::basic_string<char, std::char_traits, std::allocator >::_M_append(char const*, unsigned long)@GLIBCXX_3.4.21'
/usr/local/lib/libboost_iostreams.so: undefined reference to std::ios_base::failure[abi:cxx11]::failure(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)@GLIBCXX_3.4.21' /usr/local/lib/libboost_chrono.so: undefined reference tostd::_V2::generic_category()@GLIBCXX_3.4.21'
/usr/local/lib/libboost_filesystem.so: undefined reference to std::runtime_error::runtime_error(char const*)@GLIBCXX_3.4.21' /usr/local/lib/libboost_filesystem.so: undefined reference tostd::__cxx11::basic_string<char, std::char_traits, std::allocator >::rfind(char, unsigned long) const@GLIBCXX_3.4.21'
/usr/local/lib/libboost_regex.so: undefined reference to std::__cxx11::numpunct<char> const& std::use_facet<std::__cxx11::numpunct<char> >(std::locale const&)@GLIBCXX_3.4.21' /usr/local/lib/libboost_regex.so: undefined reference tostd::__cxx11::basic_string<char, std::char_traits, std::allocator >::_M_construct(unsigned long, char)@GLIBCXX_3.4.21'
/usr/local/lib/libboost_regex.so: undefined reference to std::__cxx11::basic_string<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> >::_M_replace_aux(unsigned long, unsigned long, unsigned long, wchar_t)@GLIBCXX_3.4.21' /usr/local/lib/libboost_filesystem.so: undefined reference to__cxa_throw_bad_array_new_length@CXXABI_1.3.8'
/usr/local/lib/libboost_date_time.so: undefined reference to std::logic_error::logic_error(std::logic_error const&)@GLIBCXX_3.4.21' /usr/local/lib/libboost_regex.so: undefined reference tostd::invalid_argument::invalid_argument(char const*)@GLIBCXX_3.4.21'
/usr/local/lib/libboost_date_time.so: undefined reference to std::__cxx11::basic_string<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> >::_M_replace(unsigned long, unsigned long, wchar_t const*, unsigned long)@GLIBCXX_3.4.21' /usr/local/lib/libboost_regex.so: undefined reference tostd::__cxx11::collate<wchar_t> const& std::use_facet<std::__cxx11::collate<wchar_t> >(std::locale const&)@GLIBCXX_3.4.21'
/usr/local/lib/libboost_regex.so: undefined reference to std::runtime_error::runtime_error(char const*)@GLIBCXX_3.4.21' /usr/local/lib/libboost_date_time.so: undefined reference tostd::out_of_range::out_of_range(std::__cxx11::basic_string<char, std::char_traits, std::allocator > const&)@GLIBCXX_3.4.21'
/usr/local/lib/libboost_iostreams.so: undefined reference to std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::reserve(unsigned long)@GLIBCXX_3.4.21' /usr/local/lib/libboost_filesystem.so: undefined reference tostd::runtime_error::runtime_error(std::__cxx11::basic_string<char, std::char_traits, std::allocator > const&)@GLIBCXX_3.4.21'
/usr/local/lib/libboost_regex.so: undefined reference to std::__cxx11::basic_string<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> >::_M_erase(unsigned long, unsigned long)@GLIBCXX_3.4.21' /usr/local/lib/libboost_program_options.so: undefined reference tovtable for std::__cxx11::basic_stringstream<char, std::char_traits, std::allocator >@GLIBCXX_3.4.21'
/usr/local/lib/libboost_program_options.so: undefined reference to std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::resize(unsigned long, char)@GLIBCXX_3.4.21' /usr/local/lib/libboost_regex.so: undefined reference tostd::__cxx11::basic_string<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> >::reserve(unsigned long)@GLIBCXX_3.4.21'
/usr/local/lib/libboost_filesystem.so: undefined reference to std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::find(char, unsigned long) const@GLIBCXX_3.4.21' /usr/local/lib/libboost_regex.so: undefined reference tobool std::has_facet<std::__cxx11::messages<wchar_t> >(std::locale const&)@GLIBCXX_3.4.21'
/usr/local/lib/libboost_regex.so: undefined reference to std::__cxx11::basic_string<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> >::_M_construct(unsigned long, wchar_t)@GLIBCXX_3.4.21' /usr/local/lib/libboost_filesystem.so: undefined reference tostd::__cxx11::basic_string<char, std::char_traits, std::allocator >::find_last_of(char const*, unsigned long, unsigned long) const@GLIBCXX_3.4.21'
/usr/local/lib/libboost_filesystem.so: undefined reference to std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_mutate(unsigned long, unsigned long, char const*, unsigned long)@GLIBCXX_3.4.21' /usr/local/lib/libboost_thread.so: undefined reference toVTT for std::__cxx11::basic_ostringstream<char, std::char_traits, std::allocator >@GLIBCXX_3.4.21'
/usr/local/lib/libboost_program_options.so: undefined reference to std::__cxx11::basic_string<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> >::compare(wchar_t const*) const@GLIBCXX_3.4.21' /usr/local/lib/libboost_regex.so: undefined reference tobool std::has_facet<std::__cxx11::messages >(std::locale const&)@GLIBCXX_3.4.21'
/usr/local/lib/libboost_regex.so: undefined reference to std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)@GLIBCXX_3.4.21' /usr/local/lib/libboost_iostreams.so: undefined reference tostd::ios_base::failure[abi:cxx11]::~failure()@GLIBCXX_3.4.21'
/usr/local/lib/libboost_chrono.so: undefined reference to std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)@GLIBCXX_3.4.21' /usr/local/lib/libboost_regex.so: undefined reference tostd::__cxx11::messages const& std::use_facet<std::__cxx11::messages >(std::locale const&)@GLIBCXX_3.4.21'
/usr/local/lib/libboost_program_options.so: undefined reference to std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const@GLIBCXX_3.4.21' /usr/local/lib/libboost_regex.so: undefined reference tostd::out_of_range::out_of_range(std::__cxx11::basic_string<char, std::char_traits, std::allocator > const&)@GLIBCXX_3.4.21'
/usr/local/lib/libboost_regex.so: undefined reference to std::__cxx11::basic_string<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> >::compare(std::__cxx11::basic_string<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> > const&) const@GLIBCXX_3.4.21' /usr/local/lib/libboost_regex.so: undefined reference tostd::__cxx11::basic_string<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> >::operator=(std::__cxx11::basic_string<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> >&&)@GLIBCXX_3.4.21'
/usr/local/lib/libboost_chrono.so: undefined reference to std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_create(unsigned long&, unsigned long)@GLIBCXX_3.4.21' /usr/local/lib/libboost_filesystem.so: undefined reference tostd::__cxx11::basic_string<char, std::char_traits, std::allocator >::find_first_of(char const*, unsigned long, unsigned long) const@GLIBCXX_3.4.21'
/usr/local/lib/libboost_thread.so: undefined reference to std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::~basic_ostringstream()@GLIBCXX_3.4.21' /usr/local/lib/libboost_iostreams.so: undefined reference tovtable for std::ios_base::failure[abi:cxx11]@GLIBCXX_3.4.21'
/usr/local/lib/libboost_program_options.so: undefined reference to std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::find(char const*, unsigned long, unsigned long) const@GLIBCXX_3.4.21' /usr/local/lib/libboost_program_options.so: undefined reference tostd::logic_error::logic_error(std::__cxx11::basic_string<char, std::char_traits, std::allocator > const&)@GLIBCXX_3.4.21'
/usr/local/lib/libboost_program_options.so: undefined reference to std::__cxx11::basic_string<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> >::~basic_string()@GLIBCXX_3.4.21' /usr/local/lib/libboost_regex.so: undefined reference tostd::overflow_error::overflow_error(char const*)@GLIBCXX_3.4.21'
/usr/local/lib/libboost_chrono.so: undefined reference to operator delete(void*, unsigned long)@CXXABI_1.3.9' /usr/local/lib/libboost_program_options.so: undefined reference tostd::basic_istream<char, std::char_traits >& std::getline<char, std::char_traits, std::allocator >(std::basic_istream<char, std::char_traits >&, std::__cxx11::basic_string<char, std::char_traits, std::allocator >&, char)@GLIBCXX_3.4.21'
/usr/local/lib/libboost_thread.so: undefined reference to std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::swap(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&)@GLIBCXX_3.4.21' /usr/local/lib/libboost_program_options.so: undefined reference tovtable for std::__cxx11::basic_stringbuf<char, std::char_traits, std::allocator >@GLIBCXX_3.4.21'
/usr/local/lib/libboost_regex.so: undefined reference to `std::__cxx11::basic_stringbuf<char, std::char_traits, std::allocator >::str() const@GLIBCXX_3.4.21'
collect2: error: ld returned 1 exit status
make[2]: *** [src/cpp/diagnostics/diagnostics] Error 1
make[1]: *** [src/cpp/diagnostics/CMakeFiles/diagnostics.dir/all] Error 2
make: *** [all] Error 2