When trying to create matplotlib plots using reticulate::repl_python() Rstudio crashes.
Some code that causes this problem for me:
First start python REPL
reticulate::repl_python()
import pandas as pd
df = pd.DataFrame({
'x': [1,2,3],
'y': [4,5,6]
})
df.plot.scatter(x='x', y= 'y')
This is true for the the preview release 1.2.679-1, was true on installing the most recent nightly build of rstudio and was also true on the most recent release. I have no such problems using python from the command line or other IDEs. I was just wondering if other had experienced this and knew of a fix?
Some info that may help diagnose:
> reticulate::py_config()
python: /filestore/ubuntu/anaconda3/bin/python
libpython: /filestore/ubuntu/anaconda3/lib/libpython3.6m.so
pythonhome: /filestore/ubuntu/anaconda3:/filestore/ubuntu/anaconda3
version: 3.6.3 |Anaconda custom (64-bit)| (default, Oct 13 2017, 12:02:49) [GCC 7.2.0]
numpy: /filestore/ubuntu/anaconda3/lib/python3.6/site-packages/numpy
numpy_version: 1.14.3
python versions found:
/filestore/ubuntu/anaconda3/bin/python
/usr/bin/python
/usr/bin/python3
> sessionInfo()
R version 3.4.4 (2018-03-15)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 18.04 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.7.1
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.7.1
locale:
[1] LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C LC_TIME=en_GB.UTF-8
[4] LC_COLLATE=en_GB.UTF-8 LC_MONETARY=en_GB.UTF-8 LC_MESSAGES=en_GB.UTF-8
[7] LC_PAPER=en_GB.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_3.4.4 Matrix_1.2-12 tools_3.4.4 Rcpp_0.12.17 reticulate_1.7.2
[6] grid_3.4.4 jsonlite_1.5 png_0.1-7 lattice_0.20-35
OS is Ubuntu 18.04