Matrix and array for Null Models

Hi, I'm following the example given for the nullmodel function: R: Generates null models for network analysis


	nullmodel(Safariland, N=2, method=1)
	nullmodel(Safariland>0, N=2, method=4)

	# analysis example:
	obs <- unlist(networklevel(Safariland, index="weighted nestedness"))
	nulls <- nullmodel(Safariland, N=100, method=1)
	null <- unlist(sapply(nulls, networklevel, index="weighted nestedness")) #takes a while ...
	plot(density(null), xlim=c(min(obs, min(null)), max(obs, max(null))), 
		main="comparison of observed with null model Patefield")
	abline(v=obs, col="red", lwd=2)    
	praw <- sum(null>obs) / length(null)
	ifelse(praw > 0.5, 1-praw, praw)    # P-value
	# comparison of null model 4 and 5 for binary:
	nulls4 <- nullmodel(Safariland>0, N=100, method=4)
	nulls5 <- nullmodel(Safariland>0, N=100, method=5)
	null4 <- unlist(sapply(nulls4, networklevel, index="weighted nestedness"))
	null5 <- unlist(sapply(nulls5, networklevel, index="weighted nestedness"))
	plot(density(null4), xlim=range(c(null4, null5)), lwd=2, 
		main="comparison of null models")
	lines(density(null5), col="red", lwd=2)
	legend("topright", c("shuffle", "mgen"), col=c("black", "red"), lwd=c(2,2), 
		bty="n", cex=1.5)
	abline(v=networklevel(Safariland>0, index="weighted nestedness"))

The data Safariland has a class "matrix" and "array". I imported a matrix of presence and absence, and the class is "tbl_df", "tbl" and "data.frame". Is there a function I can use to convert the data to "matrix" and "array"?


[1] "tbl_df" "tbl" "data.frame"

nullmodel(MatrixCen, N=2, method=1)
Error in rowSums(web) : 'x' must be numeric

Thank you.


(a_tib <- tibble(a=1:2,

(a_mat <- as.matrix(a_tib))

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