# Overall ANOVA Table in R

Looks like this problem was never solved.

This solution might help?

``````anova_table <- function(regression)
{

regress_1 <- anova(regression)
#regress_1

anovatablereg <- regress_1[-nrow(regress_1),]
#anovatablereg

ANOVA_table_Total = data.frame(DF=sum(anovatablereg\$Df), SS=sum(anovatablereg\$`Sum Sq`),MS=sum(anovatablereg\$`Sum Sq`)/sum(anovatablereg\$Df) , F_Value=NA, P_Value=NA)
ANOVA_table_Total[2,] = regress_1[nrow(regress_1),]
ANOVA_table_Total[3,] = ANOVA_table_Total[1,] + ANOVA_table_Total[2,]
ANOVA_table_Total[1,4] = ANOVA_table_Total[1,3]/ANOVA_table_Total[2,3]
ANOVA_table_Total[1,5] = 1- pf(ANOVA_table_Total[1,4],ANOVA_table_Total[1,1],ANOVA_table_Total[2,1])
ANOVA_table_Total[3,3] = NA

rownames(ANOVA_table_Total) = c("REGRESSION", "ERROR","TOTAL")

return(ANOVA_table_Total)

}

#regression is an lm_object
#i.e when you assign x <- lm(), X is the regression.
#to use the function do this
#define your lm model
#then write this code
#variable_name <- anova_table(x)
#now variable_name is a data_frame containing the anova table for the regression
#print() or View() to see the table.

``````

I am a novice R user. So be easy on the criticism. I took advantage of the lm() and anova() functions to get the overall ANOVA table. Hope this helps!

Thanks.

Krishnaa.

Here's the reprex from this post

``````anova_alt = function (object, reg_collapse=TRUE,...)
{
if (length(list(object, ...)) > 1L)
return(anova.lmlist(object, ...))
if (!inherits(object, "lm"))
warning("calling anova.lm(<fake-lm-object>) ...")
w <- object\$weights
ssr <- sum(if (is.null(w)) object\$residuals^2 else w * object\$residuals^2)
mss <- sum(if (is.null(w)) object\$fitted.values^2 else w *
object\$fitted.values^2)
if (ssr < 1e-10 * mss)
warning("ANOVA F-tests on an essentially perfect fit are unreliable")
dfr <- df.residual(object)
p <- object\$rank
if (p > 0L) {
p1 <- 1L:p
comp <- object\$effects[p1]
asgn <- object\$assign[stats:::qr.lm(object)\$pivot][p1]
nmeffects <- c("(Intercept)", attr(object\$terms, "term.labels"))
tlabels <- nmeffects[1 + unique(asgn)]
ss <- c(vapply(split(comp^2, asgn), sum, 1), ssr)
df <- c(lengths(split(asgn, asgn)), dfr)
if(reg_collapse){
if(attr(object\$terms, "intercept")){
collapse_p<-2:(length(ss)-1)
ss<-c(ss[1],sum(ss[collapse_p]),ss[length(ss)])
df<-c(df[1],sum(df[collapse_p]),df[length(df)])
tlabels<-c(tlabels[1],"Source")
} else{
collapse_p<-1:(length(ss)-1)
ss<-c(sum(ss[collapse_p]),ss[length(ss)])
df<-c(df[1],sum(df[collapse_p]),df[length(df)])
tlabels<-c("Regression")
}
}
}else {
ss <- ssr
df <- dfr
tlabels <- character()
if(reg_collapse){
collapse_p<-1:(length(ss)-1)
ss<-c(sum(ss[collapse_p]),ss[length(ss)])
df<-c(df[1],sum(df[collapse_p]),df[length(df)])
}
}

ms <- ss/df
f <- ms/(ssr/dfr)
P <- pf(f, df, dfr, lower.tail = FALSE)
table <- data.frame(df, ss, ms, f, P)
table <- rbind(table,
colSums(table))
table\$ms[nrow(table)]<-table\$ss[nrow(table)]/table\$df[nrow(table)]
table[length(P):(length(P)+1), 4:5] <- NA
dimnames(table) <- list(c(tlabels, "Error","Total"),
c("Df","SS", "MS", "F",
"P"))
if (attr(object\$terms, "intercept")){
table <- table[-1, ]
table\$MS[nrow(table)]<-table\$MS[nrow(table)]*(table\$Df[nrow(table)])/(table\$Df[nrow(table)]-1)
table\$Df[nrow(table)]<-table\$Df[nrow(table)]-1
}
structure(table, heading = c("Analysis of Variance Table\n"),
class = c("anova", "data.frame"))
}

## Warpbreaks example
fm1 <- lm(breaks ~ wool*tension, data = warpbreaks)
anova_alt(fm1)
#> Analysis of Variance Table
#>
#>        Df    SS     MS      F         P
#> Source  5  3488 697.54 5.8279 0.0002772
#> Error  48  5745 119.69
#> Total  53 52018 981.47
``````

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