The package seemed to be downloaded but fails to install
> BiocManager::install("HiTC")
Bioconductor version 3.10 (BiocManager 1.30.10), R 3.6.2 (2019-12-12)
Installing package(s) 'HiTC'
Content type 'application/zip' length 3766193 bytes (3.6 MB)
downloaded 3.6 MB
package ‘HiTC’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\mzwan\AppData\Local\Temp\RtmpAzfmqF\downloaded_packages
Installation path not writeable, unable to update packages: nnet
Old packages: 'lattice', 'RcppAnnoy', 'rlang'
Update all/some/none? [a/s/n]:
a
There is a binary version available but the source version is later:
binary source needs_compilation
rlang 0.4.4 0.4.5 TRUE
Content type 'application/zip' length 1173528 bytes (1.1 MB)
downloaded 1.1 MB
Content type 'application/zip' length 974430 bytes (951 KB)
downloaded 951 KB
Content type 'application/zip' length 1122396 bytes (1.1 MB)
downloaded 1.1 MB
package ‘lattice’ successfully unpacked and MD5 sums checked
package ‘RcppAnnoy’ successfully unpacked and MD5 sums checked
package ‘rlang’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\mzwan\AppData\Local\Temp\RtmpAzfmqF\downloaded_packages
> require(HiTC)
Loading required package: HiTC
Loading required package: IRanges
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap, parApply,
parCapply, parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
anyDuplicated, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated,
eval, evalq, Filter, Find, get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, Position, rank, rbind, Reduce,
rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which, which.max,
which.min
Loading required package: S4Vectors
Loading required package: stats4
Attaching package: ‘S4Vectors’
The following object is masked from ‘package:base’:
expand.grid
Attaching package: ‘IRanges’
The following object is masked from ‘package:grDevices’:
windows
Loading required package: GenomicRanges
Loading required package: GenomeInfoDb
Error: package or namespace load failed for ‘GenomeInfoDb’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
there is no package called ‘RCurl’
Failed with error: ‘package ‘GenomeInfoDb’ could not be loaded’