Hi comunity!!!
I have a otu_table class object named "trans
" like this:
>head(trans)
OTU Table: [219 taxa and 6 samples]
taxa are columns
OTU1 OTU2 OTU3 OTU4 OTU5 OTU6 OTU7 OTU8 OTU9 OTU10 OTU11 OTU12 OTU13 OTU14 OTU15 OTU16 OTU17 OTU18 OTU19
control 20616 0 0 0 0 1356 0 0 475198 5774 0 147399 0 0 0 0 201434 277 2333
test 0 15239 0 5775 0 2145 0 0 922024 0 0 11817 0 15497 0 1434 1303071 4632 28313
control 0 0 0 0 0 0 0 2792 1682238 20776 0 33532 0 0 0 676 102221 713 2124
test 0 6043 606 2493 5229 7110 2210 0 3786 0 0 700280 114382 0 0 0 1495655 3613 17556
I have total 6 samples (3 control and 3 test) and around 250 OTUs. Now, I want to draw a two species accumulation curve in one plot (one for control and one for test) like this:
For that, I am following this link and I want to format my otu_table object accordingly.
I just want to make two different otu_table objects (one with 3 control samples and another with 3 test samples) from the provided otu_table object "trans"
. How can I do that? Please help me.
Thanks
dpc