Problem using `list_to_matrix` function for UpsetR package

[DC7]

Hi, community!
I am using the UpsetR package for finding intersections among the sets with the size of the intersection. For that I am using this tutorial. It instructs to make a list of vectors (where each vector is a set) and then convert the list to a matrix. It uses the following code:

lt = list(set1 = c("a", "b", "c"),
          set2 = c("b", "c", "d", "e"))
list_to_matrix(lt)

But, when I use the same in my console, I find the following error:

> list_to_matrix(lt)
Error in list_to_matrix(lt) : 
'list_to_matrix()' requires a list of numeric vectors

Can anyone please tell me how can I get rid of the error and proceed smoothly?

Thanks and regards,
DC7

[mara]

@DC7

'list_to_matrix()' requires a list of numeric vectors

Your vectors, set1 and set2 are not numeric (they are character vectors). I see that the same code is used in the tutorial to which you linked, but I'm not sure what package that function, list_to_matrix(), is coming from. So, I can't check to see if something in the source code has changed.

Could you please turn this into a self-contained reprex (short for reproducible example)?

There's a nice FAQ on how to do a minimal reprex for beginners, below:

FAQ: How to do a minimal reproducible example ( reprex ) for beginners

A minimal reproducible example consists of the following items: A minimal dataset, necessary to reproduce the issue The minimal runnable code necessary to reproduce the issue, which can be run on the given dataset, and including the necessary information on the used packages. Let's quickly go over each one of these with examples: Minimal Dataset (Sample Data) You need to provide a data frame that is small enough to be (reasonably) pasted on a post, but big enough to reproduce your issue. Let's say, as an example, that you are working with the iris data frame head(iris) #> Sepal.Length Sepal.Width Petal.Length Petal.Width Species #> 1 5.1 3.5 1.4 0.…

For pointers specific to the community site, check out the reprex FAQ.

[DC7]

Thanks @mara the list_to_matrix() is coming from turner package.
Thanks,
DC7

[mara]

Could you run a reprex please (see instructions in post above)?

[DC7]

Thanks @mara for your reply. I don't understand reprex of which part do you actually want. I just mentioned the whole code that I have used. Can you please clarify?

Thanks,
DC7

[nirgrahamuk]

Shouldn't it be from ComplexHeatmap ?

[DC7]

Thanks @nirgrahamuk . I don't know why I am getting the function from both ComplexHeatmap and turner package. And, thanks to you as it is working fine when I loaded it from ComplexHeatmap package.

DC7