Problems in installing Caret package

General
#1

I have been trying to load CARET package for starting a machine learning course . It takes 4-5 hours to download but fails in the end. I am using R studio

Any help or tips as to what I am doing wrong?

Every time I get error message as below:

Loading required package: lattice

Error: package or namespace load failed for ‘caret’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):

there is no package called ‘recipes’

Information about the R version I am using is below:

sessionInfo()
R version 3.6.3 (2020-02-29)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19043)

Matrix products: default

Random number generation:
RNG: Mersenne-Twister
Normal: Inversion
Sample: Rounding

locale:
[1] LC_COLLATE=English_United States.1252
[2] LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C
[5] LC_TIME=English_United States.1252

attached base packages:
[1] stats graphics grDevices utils datasets methods
[7] base

loaded via a namespace (and not attached):
[1] compiler_3.6.3 cli_2.5.0 tools_3.6.3

#2

Have you tried installing the missing package dependency?

install.packages("recipes")
#3

Hi Andresrcs,

I did try to load the Recipes package separately but that failed as well. So I am still stuck with the issues

#4

Can you please be more specific? Do you get an error message? If so, post the complete output message you get when you try to install the recipes package.

#5

Hi Andresrcs,

Here is the error message I am getting when I try to load recipes package:
installing source package 'recipes' ...

** package 'recipes' successfully unpacked and MD5 sums checked

** using staged installation

** R

** inst

** byte-compile and prepare package for lazy loading

Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :

namespace 'ipred' 0.9-11 is being loaded, but >= 0.9.12 is required

Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace

Execution halted

ERROR: lazy loading failed for package 'recipes'

  • removing 'C:/Users/Rekha Rao/Desktop/R-3.6.3/library/recipes'

Warning in install.packages :

installation of package ‘recipes’ had non-zero exit status

The downloaded source packages are in

‘C:\Users\Rekha Rao\AppData\Local\Temp\RtmpQz4lBT\downloaded_packages’

#6

OK, now this is asking you to update the ipred package

install.packages("ipred")

You have to keep debugging this way until you reach the root cause.

#7

Hi Andresrcs,

I did try to load "ipred " package but I am getting errors again

install.packages("ipred", dependencies = TRUE)
WARNING: Rtools is required to build R packages but is not currently installed. Please download and install the appropriate version of Rtools before proceeding:

https://cran.rstudio.com/bin/windows/Rtools/

There is a binary version available but the source version is
later:
binary source needs_compilation
ipred 0.9-11 0.9-12 TRUE

Binaries will be installed
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.6/ipred_0.9-11.zip'
Content type 'application/zip' length 401183 bytes (391 KB)
downloaded 391 KB

package ‘ipred’ successfully unpacked and MD5 sums checked

The downloaded binary packages are in
C:\Users\Rekha Rao\AppData\Local\Temp\RtmpQz4lBT\downloaded_packages

After I tried installing "ipred" I tried again to re-install recipes and got the same error message

installing source package 'recipes' ...
** package 'recipes' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace 'ipred' 0.9-11 is being loaded, but >= 0.9.12 is required
Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
ERROR: lazy loading failed for package 'recipes'

  • removing 'C:/Users/Rekha Rao/Desktop/R-3.6.3/library/recipes'
    Warning in install.packages :
    installation of package ‘recipes’ had non-zero exit status

Basically I am doing Harvard University Course. Trying to create Test and Training sets using CreateDataPartition and getting an error that there is no such function.

test_index <- createDataPartition(y, times = 1, p = 0.5, list = FALSE)
Error in createDataPartition(y, times = 1, p = 0.5, list = FALSE) :
could not find function "createDataPartition"

Thats y I am working backwards to understand what is causing this problem

#8

This is the root cause, you need to install a newer version of the ipred package which is only available in source form for your R version. To install packages from source you need a compiler, for Windows systems this compiler is RTools, which is a separate software that you need to install in your system (not in R).

You can download older versions of RTools (suitable for your older R version) from here:

https://cran.r-project.org/bin/windows/Rtools/history.html

Although, I would recommend you to update your entire R environment (including base R, RTools and your package library) to the latest versions.

1 Like
#9

I am not a quick typist and posted after andresrcs!

You have successfully installed ipred, but it is still version 0.9-11 and you need 0.9-12. Because you are using an old version of R, 3.6.3, a compiled (binary) version of the newer 0.9-12 is not available on CRAN (CRAN has binaries of 0.9-12 for R 4.0 and R 4.1, the two most recent versions).
You could compile for R 3.6.3 from source but would need to install Rtools first (Rtools is the set of tools to compile packages from C/C++/Fortran code, it is not an R package). Another option is to update the version of R. This will let you install binary versions of packages from CRAN, making life much easier.

#10

Thank you Andresrcs for your patience and help.

I upgraded to the latest version of R and caret package is now working.

#11

Thank you EconProf.

I upgraded the R to latest 4.1.2 version and caret package is now working

#12

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