R 3.5 error when deploying App to shinyapps.io

[eirr]

I try to deployed with new R version 3.5 because I use a package wich only works with bioconductor 3.7 wich only works with R 3.5.

When I deployed the app i get this error:

Preparing to deploy application...DONE
Uploading bundle for application: 351585...DONE
Deploying bundle: 1402357 for application: 351585 ...
Waiting for task: 528942106
building: Processing bundle: 1402357
building: Parsing manifest
building: Building image: 1415600
building: Building package: viridisLite
################################ Begin Task Log ################################
################################# End Task Log #################################
Error: Unhandled Exception: Child Task 528942107 failed: Error building image: Error building viridisLite (0.3.0). R version 3.5.0 currently unavailable
Adem�s: Warning messages:
1: In FUN(X[[i]], ...) :
Package 'vioplot 0.2' was installed from sources; Packrat will assume this package is available from a CRAN-like repository during future restores
2: In FUN(X[[i]], ...) :
Package 'vioplot 0.2' was installed from sources; Packrat will assume this package is available from a CRAN-like repository during future restores
Ejecuci�n interrumpida

Can I solve the viridisLite problem or I have to waited till this package have a compatible version with R.3.5 to deploy the app?

[EconomiCurtis]

The most recent update I heard is here:

Error deploying to shinyapps.io

It may be some time before the Ubuntu R packages are available on CRAN, from what I can tell by Googling a bit: https://stat.ethz.ch/pipermail/r-sig-debian/2018-April/002829.html https://stackoverflow.com/questions/50076354/r-3-5-is-not-available-for-linux https://twitter.com/search?q=%40marutterstat&src=typd For the time being, you would need to downgrade to R 3.4.4 or lower in order to deploy to shinyapps.io

[mara]

Well shinyapps.io should support 3.5 starting today, but you will need your packages (e.g. viridisLite) to be compatible with 3.5 in order for that to work:

Update on R 3.5.0 on shinyapps.io

First of all, thank you for bearing with us in this delay. Historically new versions of R were made available for Ubuntu on CRAN just a few days after the regular release, and we were caught flat-footed; our apologies. In order to support R 3.5.0 and to have more control in the future, on 5/31/2018 we will be updating the base system that we provide on shinyapps.io from Ubuntu 14.04 (trusty) to Ubuntu 16.04 (xenial). Initially only new applications and new deployments of existing applications will take advantage of this. If you run into any issues while deploying your application after this change, please reach out to us (here, or at shinyapps-support@rstudio.com if you are on paid plan) an…

[eirr]

Hi, thank you for your response, I suppose in my local machine viridisLite is compatabile because I can run the shinyapp locally and runs perfectly fine, problem is the deploying procces. So I guess I have to wait to deployed into shinyapps.io

With the deployment of R3.5 in shinyapps.io now I found the next problem

Preparing to deploy application...DONE
Uploading bundle for application: 351904...DONE
Deploying bundle: 1403153 for application: 351904 ...
Waiting for task: 529018179
building: Processing bundle: 1403153
building: Parsing manifest
building: Building image: 1416403
building: Fetching packages
error: Building package: graph
################################ Begin Task Log ################################
################################# End Task Log #################################
Error: Unhandled Exception: Child Task 529018180 failed: Error building image: Error fetching graph (1.57.1) source. Error downloading package source. Please update your BioConductor packages to the latest version and try again:

I understand that I have to update the graph package, but I'm unnable to do It seems that the new version 1.58.0 installs but it-s not working

Best regards

Javi