I am following code from an example using GerminaR, which uses the prosopis data set already in R. I changed the code for my own data set. My data loads no problem, but when I try to do the germination analysis it uses the prosopis data. I am not sure what my error in the code is for this to occur. Any advice on how to fix this?
This image shows R using the prosopis data instead of mine to produce the germination summary table. Using the code to load the dataset, I had no issues with the table being created, but it will not use my data for the analysis.
Here is the original code.
# Install packages and dependencies library(GerminaR) library(dplyr) # load data fb <- prosopis %>% dplyr::mutate(across(c(nacl, temp, rep), as.factor)) # Prosopis data set fb %>% head(10) %>% kable(caption = "Prosopis dataset loaded")
# germination analysis (ten variables) gsm <- ger_summary(SeedN = "seeds" , evalName = "D" , data = fb ) # Prosopis data set processed gsm %>% head(10) %>% kable(caption = "Function ger_summary performe ten germination indices")