Hi @maelle
So I followed idea of renaming .Rmd with .orig at the end and then knitting locally. I did just for a two of the vignettes to start just to make sure everything looks ok. But I'm now getting earlier error during the build step in the check:
Failed to build source package 'scCustomize', stdout + stderr:
OE> * installing *source* package ‘scCustomize’ ...
OE> staged installation is only possible with locking
OE> ** using non-staged installation
OE> ** R
OE> ** data
OE> *** moving datasets to lazyload DB
OE> ** byte-compile and prepare package for lazy loading
OE> Warning in file(con, "r") :
OE> cannot open file 'vignettes/Read_and_Write_Functions.Rmd.orig': No such file or directory
OE> Error in file(con, "r") : cannot open the connection
OE> Error: unable to load R code in package ‘scCustomize’
OE> Execution halted
OE> ERROR: lazy loading failed for package ‘scCustomize’
OE> * removing ‘/private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/RtmpjsfMWD/pkg-libd1270365e48/scCustomize’
Not sure why that's happening though...