quick question if anyone can help,
I'm trying to create a function that reads in multiple geo scRNAseq data sets so ideally want to just use the .h5 file extension to grab the data from the folders they are stored in,
I have code running perfectly for in-house data that's in a 10x 3 file format when I use the read10x function, but when I try to replace the read10X function with read10X_h5 to read in geo data, the files can be located unless I put the full file name in. do I have to use the full file name for each file?
top line works, bottom line doesn't
tmp = Read10X_h5("/filtered_feature_bc_matrix/GSM4339769_C141_filtered_feature_bc_matrix.h5")
tmp = Read10X_h5("/filtered_feature_bc_matrix/*.h5")