Crash Information:
My RStudio has been crashing a lot recently after updating to the newest release of Ubuntu. It seems like this is related to opening/loading files, but I don't know how to confirm that.
Steps to reproduce -
RStudio crashed at opts_knit$set
> require(dplyr)
> require("knitr")
> require(readr)
> require(readxl)
> opts_knit$set(root.dir = "~/R/Data/Data 201/Week 4")
Here are Ubuntu logs
jon@rstudio:~$ journalctl -f
-- Logs begin at Fri 2020-05-29 22:51:25 UTC. --
Nov 21 12:28:36 rstudio systemd[1008]: Startup finished in 655ms.
Nov 21 12:28:36 rstudio systemd[1]: Started User Manager for UID 1000.
Nov 21 12:28:36 rstudio systemd[1]: Started Session 5 of user jon.
Nov 21 12:29:29 rstudio snapd[701]: storehelpers.go:551: cannot refresh: snap has no updates available: "core", "core18", "lxd"
Nov 21 12:29:29 rstudio snapd[701]: autorefresh.go:410: auto-refresh: all snaps are up-to-date
Nov 21 13:17:01 rstudio CRON[1139]: pam_unix(cron:session): session opened for user root by (uid=0)
Nov 21 13:17:01 rstudio CRON[1140]: (root) CMD ( cd / && run-parts --report /etc/cron.hourly)
Nov 21 13:17:01 rstudio CRON[1139]: pam_unix(cron:session): session closed for user root
Nov 21 13:37:03 rstudio rsession-jon[1214]: ERROR session hadabend; LOGGED FROM: rstudio::core::Error {anonymous}::rInit(const rstudio::r::session::RInitInfo&) src/cpp/session/SessionMain.cpp:655
Nov 21 13:37:44 rstudio kernel: TCP: request_sock_TCP: Possible SYN flooding on port 3501. Sending cookies. Check SNMP counters.
System Information:
This is an Ubuntu VM running on Proxmox. RStudio is installed on an SSD with the data stored on a seperate drive that is mounted locally.
- Your
sessionInfo():
> sessionInfo()
R version 4.0.3 (2020-10-10)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 20.04.1 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8 LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8
[6] LC_MESSAGES=C.UTF-8 LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] ggplot2_3.3.2 readxl_1.3.1 readr_1.4.0 knitr_1.30 dplyr_1.0.2 tidyr_1.1.2
loaded via a namespace (and not attached):
[1] Rcpp_1.0.5 pillar_1.4.6 compiler_4.0.3 cellranger_1.1.0 tools_4.0.3 digest_0.6.27
[7] lifecycle_0.2.0 tibble_3.0.4 gtable_0.3.0 lattice_0.20-41 pkgconfig_2.0.3 rlang_0.4.8
[13] Matrix_1.2-18 cli_2.1.0 rstudioapi_0.11 xfun_0.19 withr_2.3.0 generics_0.1.0
[19] vctrs_0.3.4 hms_0.5.3 grid_4.0.3 tidyselect_1.1.0 glue_1.4.2 R6_2.5.0
[25] fansi_0.4.1 purrr_0.3.4 magrittr_1.5 scales_1.1.1 ellipsis_0.3.1 htmltools_0.5.0
[31] assertthat_0.2.1 colorspace_1.4-1 munsell_0.5.0 crayon_1.3.4
Crash Report:
jon@rstudio:~$ /usr/lib/rstudio/bin/rstudio-backtrace.sh
-bash: /usr/lib/rstudio/bin/rstudio-backtrace.sh: No such file or directory