Rstudio crashes when using the "file" outlet

Hi everyone,

I am currently having trouble using Rstudio. Everything works fine until I click on the file outlets, then it freezes with the "Rstudio does not respond" error message. Even if I am not creating/saving a new file/project it happens each time I use the file button.

I have already removes the ~/.rstudio-desktop and ~/.config/RStudio folders....

Does anyone have already have a similar issue ?
Thanks you in advance for your advice,

Clément

PS: Here is my rstudio-diagnostic-report file :

[1] "1.1.453"

$R
[1] "/usr/bin/R"

$pdflatex
[1] "/usr/bin/pdflatex"

$bibtex
[1] "/usr/bin/bibtex"

$gcc
[1] "/usr/bin/gcc"

$git
[1] "/usr/bin/git"

$svn
[1] "/usr/bin/svn"

R version 3.5.0 (2018-04-23)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)

Matrix products: default
BLAS: /bioinfo/local/build/Centos/R/R-3.5.0/lib64/R/lib/libRblas.so
LAPACK: /bioinfo/local/build/Centos/R/R-3.5.0/lib64/R/lib/libRlapack.so

locale:
 [1] LC_CTYPE=fr_FR.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=fr_FR.UTF-8        LC_COLLATE=fr_FR.UTF-8    
 [5] LC_MONETARY=fr_FR.UTF-8    LC_MESSAGES=fr_FR.UTF-8   
 [7] LC_PAPER=fr_FR.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=fr_FR.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
[1] compiler_3.5.0 tools_3.5.0   

SysInfo:
                              sysname                               release 
                              "Linux"          "3.10.0-862.11.6.el7.x86_64" 
                              version                              nodename 
"#1 SMP Tue Aug 14 21:49:04 UTC 2018"       "u900-bdd-1-198n-6985.curie.fr" 
                              machine                                 login 
                             "x86_64"                             "cbenoit" 
                                 user                        effective_user 
                            "cbenoit"                             "cbenoit" 

R Version:
               _                           
platform       x86_64-pc-linux-gnu         
arch           x86_64                      
os             linux-gnu                   
system         x86_64, linux-gnu           
status                                     
major          3                           
minor          5.0                         
year           2018                        
month          04                          
day            23                          
svn rev        74626                       
language       R                           
version.string R version 3.5.0 (2018-04-23)
nickname       Joy in Playing              
$`_`
[1] "/bioinfo/local/build/Centos/R/rstudio/rstudio"

$`BASH_FUNC_module()`
[1] "() {  eval `/usr/bin/modulecmd bash $*`\n}"

$BOLD
[1] "\\e[1m"

$BOWTIE_INDEXES
[1] "/data/annotations/bowtie_indexes/"

$CLICOLOR_FORCE
[1] "1"

$COBBLER_SERVER
[1] "kickstart.curie.fr"

$COLORTERM
[1] "truecolor"

$DBUS_SESSION_BUS_ADDRESS
[1] "unix:abstract=/tmp/dbus-BO8Fs7q4TX,guid=56bad48780b230d11bd277655d4415cd"

$DEF
[1] "\\e[0;0m"

$DESKTOP_SESSION
[1] "gnome-classic"

$DISPLAY
[1] ":0"

$EDITOR
[1] "vi"

$ftp_proxy
[1] "http://www-cache:3128"

$FTP_PROXY
[1] "http://www-cache:3128"

$GDM_LANG
[1] "fr_FR.UTF-8"

$GDMSESSION
[1] "gnome-classic"

$GIT_ASKPASS
[1] "rpostback-askpass"

$GJS_DEBUG_OUTPUT
[1] "stderr"

$GJS_DEBUG_TOPICS
[1] "JS ERROR;JS LOG"

$GNOME_DESKTOP_SESSION_ID
[1] "this-is-deprecated"

$GNOME_SHELL_SESSION_MODE
[1] "classic"

$HDF5_DIR
[1] "/bioinfo/users/cbenoit/Apps/hdf5/bin/"

$HISTCONTROL
[1] "ignoredups"

$HISTSIZE
[1] "1000"

$HOME
[1] "/data/users/cbenoit"

$HOSTNAME
[1] "u900-bdd-1-198n-6985.curie.fr"

$http_proxy
[1] "http://www-cache.curie.fr:3128"

$HTTP_PROXY
[1] "http://www-cache.curie.fr:3128"

$https_proxy
[1] "http://www-cache:3128"

$HTTPS_PROXY
[1] "http://www-cache:3128"

$IMSETTINGS_INTEGRATE_DESKTOP
[1] "yes"

$IMSETTINGS_MODULE
[1] "none"

$KDEDIRS
[1] "/usr"

$LANG
[1] "fr_FR.UTF-8"

$LD_LIBRARY_PATH
[1] "/bioinfo/local/build/Centos/R/R-3.5.0/lib64/R/lib::/lib:/usr/local/lib64:/usr/lib/jvm/java-1.8.0-openjdk/jre/lib/amd64/server"

$LESSOPEN
[1] "||/usr/bin/lesspipe.sh %s"

$LN_S
[1] "ln -s"

$LOADEDMODULES
[1] ""

$LOGNAME
[1] "cbenoit"

$LS_COLORS
[1] "rs=0:di=38;5;27:ln=38;5;51:mh=44;38;5;15:pi=40;38;5;11:so=38;5;13:do=38;5;5:bd=48;5;232;38;5;11:cd=48;5;232;38;5;3:or=48;5;232;38;5;9:mi=05;48;5;232;38;5;15:su=48;5;196;38;5;15:sg=48;5;11;38;5;16:ca=48;5;196;38;5;226:tw=48;5;10;38;5;16:ow=48;5;10;38;5;21:st=48;5;21;38;5;15:ex=38;5;34:*.tar=38;5;9:*.tgz=38;5;9:*.arc=38;5;9:*.arj=38;5;9:*.taz=38;5;9:*.lha=38;5;9:*.lz4=38;5;9:*.lzh=38;5;9:*.lzma=38;5;9:*.tlz=38;5;9:*.txz=38;5;9:*.tzo=38;5;9:*.t7z=38;5;9:*.zip=38;5;9:*.z=38;5;9:*.Z=38;5;9:*.dz=38;5;9:*.gz=38;5;9:*.lrz=38;5;9:*.lz=38;5;9:*.lzo=38;5;9:*.xz=38;5;9:*.bz2=38;5;9:*.bz=38;5;9:*.tbz=38;5;9:*.tbz2=38;5;9:*.tz=38;5;9:*.deb=38;5;9:*.rpm=38;5;9:*.jar=38;5;9:*.war=38;5;9:*.ear=38;5;9:*.sar=38;5;9:*.rar=38;5;9:*.alz=38;5;9:*.ace=38;5;9:*.zoo=38;5;9:*.cpio=38;5;9:*.7z=38;5;9:*.rz=38;5;9:*.cab=38;5;9:*.jpg=38;5;13:*.jpeg=38;5;13:*.gif=38;5;13:*.bmp=38;5;13:*.pbm=38;5;13:*.pgm=38;5;13:*.ppm=38;5;13:*.tga=38;5;13:*.xbm=38;5;13:*.xpm=38;5;13:*.tif=38;5;13:*.tiff=38;5;13:*.png=38;5;13:*.svg=38;5;13:*.svgz=38;5;13:*.mng=38;5;13:*.pcx=38;5;13:*.mov=38;5;13:*.mpg=38;5;13:*.mpeg=38;5;13:*.m2v=38;5;13:*.mkv=38;5;13:*.webm=38;5;13:*.ogm=38;5;13:*.mp4=38;5;13:*.m4v=38;5;13:*.mp4v=38;5;13:*.vob=38;5;13:*.qt=38;5;13:*.nuv=38;5;13:*.wmv=38;5;13:*.asf=38;5;13:*.rm=38;5;13:*.rmvb=38;5;13:*.flc=38;5;13:*.avi=38;5;13:*.fli=38;5;13:*.flv=38;5;13:*.gl=38;5;13:*.dl=38;5;13:*.xcf=38;5;13:*.xwd=38;5;13:*.yuv=38;5;13:*.cgm=38;5;13:*.emf=38;5;13:*.axv=38;5;13:*.anx=38;5;13:*.ogv=38;5;13:*.ogx=38;5;13:*.aac=38;5;45:*.au=38;5;45:*.flac=38;5;45:*.mid=38;5;45:*.midi=38;5;45:*.mka=38;5;45:*.mp3=38;5;45:*.mpc=38;5;45:*.ogg=38;5;45:*.ra=38;5;45:*.wav=38;5;45:*.axa=38;5;45:*.oga=38;5;45:*.spx=38;5;45:*.xspf=38;5;45:"

$MAIL
[1] "/var/spool/mail/cbenoit"

$MAKE
[1] "make"

$MODULEPATH
[1] "/usr/share/Modules/modulefiles:/etc/modulefiles"

$MODULESHOME
[1] "/usr/share/Modules"

$no_proxy
[1] "localhost,127.0.0.0/8,10.0.0.0/8,.curie.fr,.curie.u-psud.fr,.curie.net"

$PAGER
[1] "/usr/bin/less"

$PATH
[1] "/bioinfo/local/build/Centos/tabix/tabix-0.2.5/:/bioinfo/local/build/Centos/R/rstudio/:/bioinfo/users/cbenoit/Documents/Tools/msisensor:/bioinfo/users/cbenoit/Apps/hdf5/bin/:/bioinfo/local/build/Centos/bowtie2-2.2.5/:/bioinfo/local/build/Centos/samtools/samtools-1.3/bin/:/usr/bin/:/bioinfo/local/Centos/BEDTools/bin/:/bioinfo/local/build/Centos/python/python-2.7.12/bin/:/bioinfo/local/build/Centos/python/python-3.5.2/bin/:/bioinfo/local/build/Centos/python/python-2.7.12/bin:/usr/local/bin:/usr/bin:/bin:/data/kdi_prod/bin/:/bioinfo/pipelines/kdi_fs/bin/"

$PERL5LIB
[1] "/bioinfo/users/cbenoit/Apps/perl_modules/lib/perl5/"

$proxy
[1] "http://www-cache:3128"

$PROXY
[1] "http://www-cache:3128"

$PWD
[1] "/bioinfo/users/cbenoit"

$QT_GRAPHICSSYSTEM_CHECKED
[1] "1"

$QT_IM_MODULE
[1] "xim"

$QT_PLUGIN_PATH
[1] "/usr/lib64/kde4/plugins:/usr/lib/kde4/plugins"

$QTDIR
[1] "/usr/lib64/qt-3.3"

$QTINC
[1] "/usr/lib64/qt-3.3/include"

$QTLIB
[1] "/usr/lib64/qt-3.3/lib"

$R_BROWSER
[1] "/usr/bin/firefox"

$R_BZIPCMD
[1] "/usr/bin/bzip2"

$R_DOC_DIR
[1] "/bioinfo/local/build/Centos/R/R-3.5.0/lib64/R/doc"

$R_GZIPCMD
[1] "/usr/bin/gzip"

$R_HOME
[1] "/bioinfo/local/build/Centos/R/R-3.5.0/lib64/R"

$R_INCLUDE_DIR
[1] "/bioinfo/local/build/Centos/R/R-3.5.0/lib64/R/include"

$R_LIBS_SITE
[1] ""

$R_LIBS_USER
[1] "~/R/x86_64-pc-linux-gnu-library/3.5"

$R_PAPERSIZE
[1] "a4"

$R_PDFVIEWER
[1] "/usr/bin/xdg-open"

$R_PLATFORM
[1] "x86_64-pc-linux-gnu"

$R_PRINTCMD
[1] "lpr"

$R_RD4PDF
[1] "times,inconsolata,hyper"

$R_SESSION_TMPDIR
[1] "/tmp/RtmpYpOztw"

$R_SHARE_DIR
[1] "/bioinfo/local/build/Centos/R/R-3.5.0/lib64/R/share"

$R_SYSTEM_ABI
[1] "linux,gcc,gxx,gfortran,?"

$R_TEXI2DVICMD
[1] "texi2dvi"

$R_UNZIPCMD
[1] "/usr/bin/unzip"

$R_ZIPCMD
[1] "/usr/bin/zip"

$RMARKDOWN_MATHJAX_PATH
[1] "/bioinfo/local/build/Centos/R/rstudio/rstudio-1.1.453/resources/mathjax-26"

$RS_LOCAL_PEER
[1] "/tmp/20364-rsession"

$RS_PPM_FD_READ
[1] "11"

$RS_PPM_FD_WRITE
[1] "12"

$RS_RPOSTBACK_PATH
[1] "/bioinfo/local/build/Centos/R/rstudio/rstudio-1.1.453/bin/rpostback"

$RS_SHARED_SECRET
[1] "16816927778469308861804289383"

$RSTUDIO
[1] "1"

$RSTUDIO_CONSOLE_COLOR
[1] "256"

$RSTUDIO_CONSOLE_WIDTH
[1] "80"

$RSTUDIO_PANDOC
[1] "/bioinfo/local/build/Centos/R/rstudio/rstudio-1.1.453/bin/pandoc"

$RSTUDIO_SESSION_PORT
[1] "20364"

$RSTUDIO_USER_IDENTITY
[1] "cbenoit"

$RSTUDIO_WHICH_R
[1] "/bioinfo/local/build/Centos/R/R-3.5.0/bin/R"

$RSTUDIO_WINUTILS
[1] "bin/winutils"

$SED
[1] "/usr/bin/sed"

$SESSION_MANAGER
[1] "local/unix:@/tmp/.ICE-unix/13958,unix/unix:/tmp/.ICE-unix/13958"

$SHELL
[1] "/bin/bash"

$SHLVL
[1] "2"

$SSH_AGENT_PID
[1] "14137"

$SSH_AUTH_SOCK
[1] "/run/user/7629/keyring/ssh"

$TAR
[1] "/usr/bin/gtar"

$TERM
[1] "xterm-256color"

$UNDER
[1] "\\e[4m"

$USER
[1] "cbenoit"

$USERNAME
[1] "cbenoit"

$VTE_VERSION
[1] "4602"

$WINDOWID
[1] "41951261"

$WINDOWPATH
[1] "1"

$XAUTHORITY
[1] "/run/gdm/auth-for-cbenoit-83fb3v/database"

$XDG_CURRENT_DESKTOP
[1] "GNOME-Classic:GNOME"

$XDG_MENU_PREFIX
[1] "gnome-"

$XDG_RUNTIME_DIR
[1] "/run/user/7629"

$XDG_SEAT
[1] "seat0"

$XDG_SESSION_DESKTOP
[1] "gnome-classic"

$XDG_SESSION_ID
[1] "1"

$XDG_SESSION_TYPE
[1] "x11"

$XDG_VTNR
[1] "1"

$XMODIFIERS
[1] "@im=none"

 [1] ".GlobalEnv"        "tools:rstudio"     "package:stats"    
 [4] "package:graphics"  "package:grDevices" "package:utils"    
 [7] "package:datasets"  "package:methods"   "Autoloads"        
[10] "package:base"     
Log file: rdesktop.log
--------------------------------------------------

02 Aug 2019 11:19:13 [rdesktop] ERROR system error 104 (Connexion ré-initialisée par le correspondant); OCCURRED AT: void rstudio::core::http::AsyncClient<SocketService>::handleReadStatusLine(const rstudio_boost::system::error_code&) [with SocketService = rstudio_boost::asio::basic_stream_socket<rstudio_boost::asio::local::stream_protocol>] /home/fedora/rstudio/src/cpp/core/include/core/http/AsyncClient.hpp:376; LOGGED FROM: void rstudio::desktop::NetworkReply::onError(const rstudio::core::Error&) /home/fedora/rstudio/src/cpp/desktop/DesktopNetworkReply.cpp:288
02 Aug 2019 12:04:56 [rdesktop] WARNING R include path (/usr/include/R) not found; LOGGED FROM: bool core::r_util::<unnamed>::validateREnvironment(const core::r_util::EnvironmentVars&, const core::FilePath&, std::string*) /root/rstudio/src/cpp/core/r_util/REnvironmentPosix.cpp:390

Log file: rsession-cbenoit.log
--------------------------------------------------

02 Aug 2019 11:21:33 [rsession-cbenoit] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() /home/fedora/rstudio/src/cpp/session/SessionMain.cpp:1239
02 Aug 2019 11:25:19 [rsession-cbenoit] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() /home/fedora/rstudio/src/cpp/session/SessionMain.cpp:1239
02 Aug 2019 11:25:52 [rsession-cbenoit] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() /home/fedora/rstudio/src/cpp/session/SessionMain.cpp:1239
02 Aug 2019 11:26:53 [rsession-cbenoit] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() /home/fedora/rstudio/src/cpp/session/SessionMain.cpp:1239
02 Aug 2019 11:27:48 [rsession-cbenoit] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() /home/fedora/rstudio/src/cpp/session/SessionMain.cpp:1239
02 Aug 2019 11:32:09 [rsession-cbenoit] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() /home/fedora/rstudio/src/cpp/session/SessionMain.cpp:1239
02 Aug 2019 11:34:36 [rsession-cbenoit] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() /home/fedora/rstudio/src/cpp/session/SessionMain.cpp:1239
02 Aug 2019 11:47:30 [rsession-cbenoit] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() /home/fedora/rstudio/src/cpp/session/SessionMain.cpp:1239
02 Aug 2019 11:49:03 [rsession-cbenoit] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() /home/fedora/rstudio/src/cpp/session/SessionMain.cpp:1239
02 Aug 2019 11:49:44 [rsession-cbenoit] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() /home/fedora/rstudio/src/cpp/session/SessionMain.cpp:1239
02 Aug 2019 11:54:02 [rsession-cbenoit] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() /home/fedora/rstudio/src/cpp/session/SessionMain.cpp:1239
02 Aug 2019 11:55:05 [rsession-cbenoit] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() /home/fedora/rstudio/src/cpp/session/SessionMain.cpp:1239
02 Aug 2019 11:59:49 [rsession-cbenoit] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() /home/fedora/rstudio/src/cpp/session/SessionMain.cpp:1239
02 Aug 2019 12:00:43 [rsession-cbenoit] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() /home/fedora/rstudio/src/cpp/session/SessionMain.cpp:1239
02 Aug 2019 12:02:14 [rsession-cbenoit] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() /home/fedora/rstudio/src/cpp/session/SessionMain.cpp:1239

You might first try updating to the latest release of RStudio, to see if you have any better luck.

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