[1] "1.2.1335"
$R
[1] "/usr/bin/R"
$pdflatex
[1] "/usr/bin/pdflatex"
$bibtex
[1] "/usr/bin/bibtex"
$gcc
[1] "/usr/bin/gcc"
$git
[1] ""
$svn
[1] ""
R version 3.4.4 (2018-03-15)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 18.04.2 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/libopenblasp-r0.2.20.so
locale:
[1] LC_CTYPE=en_IN.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_IN.UTF-8 LC_COLLATE=en_IN.UTF-8
[5] LC_MONETARY=en_IN.UTF-8 LC_MESSAGES=en_IN.UTF-8
[7] LC_PAPER=en_IN.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_IN.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_3.4.4 tools_3.4.4
SysInfo:
sysname
"Linux"
release
"4.18.0-22-generic"
version
"#23~18.04.1-Ubuntu SMP Thu Jun 6 08:37:25 UTC 2019"
nodename
"rns-pbg-ws"
machine
"x86_64"
login
"unknown"
user
"rnsarma"
effective_user
"rnsarma"
R Version:
_
platform x86_64-pc-linux-gnu
arch x86_64
os linux-gnu
system x86_64, linux-gnu
status
major 3
minor 4.4
year 2018
month 03
day 15
svn rev 74408
language R
version.string R version 3.4.4 (2018-03-15)
nickname Someone to Lean On
$_
[1] "/usr/bin/rstudio"
$CLICOLOR_FORCE
[1] "1"
$COLORTERM
[1] "truecolor"
$COMPIZ_CONFIG_PROFILE
[1] "mate"
$DBUS_SESSION_BUS_ADDRESS
[1] "unix:path=/run/user/1000/bus"
$DESKTOP_SESSION
[1] "mate"
$DISPLAY
[1] ":0"
$EDITOR
[1] "vi"
$GDM_LANG
[1] "en_US"
$GDMSESSION
[1] "mate"
$GIT_ASKPASS
[1] "rpostback-askpass"
$GPG_AGENT_INFO
[1] "/run/user/1000/gnupg/S.gpg-agent:0:1"
$GTK_MODULES
[1] "appmenu-gtk-module:gail:atk-bridge:canberra-gtk-module"
$GTK_OVERLAY_SCROLLING
[1] "0"
$HOME
[1] "/home/rnsarma"
$LANG
[1] "en_IN.UTF-8"
$LANGUAGE
[1] "en_IN:en"
$LD_LIBRARY_PATH
[1] "/usr/lib/R/lib::/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/default-java/lib/server"
$LESSCLOSE
[1] "/usr/bin/lesspipe %s %s"
$LESSOPEN
[1] "| /usr/bin/lesspipe %s"
$LN_S
[1] "ln -s"
$LOGNAME
[1] "rnsarma"
$LS_COLORS
[1] "rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:.tar=01;31:.tgz=01;31:.arc=01;31:.arj=01;31:.taz=01;31:.lha=01;31:.lz4=01;31:.lzh=01;31:.lzma=01;31:.tlz=01;31:.txz=01;31:.tzo=01;31:.t7z=01;31:.zip=01;31:.z=01;31:.Z=01;31:.dz=01;31:.gz=01;31:.lrz=01;31:.lz=01;31:.lzo=01;31:.xz=01;31:.zst=01;31:.tzst=01;31:.bz2=01;31:.bz=01;31:.tbz=01;31:.tbz2=01;31:.tz=01;31:.deb=01;31:.rpm=01;31:.jar=01;31:.war=01;31:.ear=01;31:.sar=01;31:.rar=01;31:.alz=01;31:.ace=01;31:.zoo=01;31:.cpio=01;31:.7z=01;31:.rz=01;31:.cab=01;31:.wim=01;31:.swm=01;31:.dwm=01;31:.esd=01;31:.jpg=01;35:.jpeg=01;35:.mjpg=01;35:.mjpeg=01;35:.gif=01;35:.bmp=01;35:.pbm=01;35:.pgm=01;35:.ppm=01;35:.tga=01;35:.xbm=01;35:.xpm=01;35:.tif=01;35:.tiff=01;35:.png=01;35:.svg=01;35:.svgz=01;35:.mng=01;35:.pcx=01;35:.mov=01;35:.mpg=01;35:.mpeg=01;35:.m2v=01;35:.mkv=01;35:.webm=01;35:.ogm=01;35:.mp4=01;35:.m4v=01;35:.mp4v=01;35:.vob=01;35:.qt=01;35:.nuv=01;35:.wmv=01;35:.asf=01;35:.rm=01;35:.rmvb=01;35:.flc=01;35:.avi=01;35:.fli=01;35:.flv=01;35:.gl=01;35:.dl=01;35:.xcf=01;35:.xwd=01;35:.yuv=01;35:.cgm=01;35:.emf=01;35:.ogv=01;35:.ogx=01;35:.aac=00;36:.au=00;36:.flac=00;36:.m4a=00;36:.mid=00;36:.midi=00;36:.mka=00;36:.mp3=00;36:.mpc=00;36:.ogg=00;36:.ra=00;36:.wav=00;36:.oga=00;36:.opus=00;36:.spx=00;36:.xspf=00;36:"
$MAKE
[1] "make"
$MATE_DESKTOP_SESSION_ID
[1] "this-is-deprecated"
$MATLABPATH
[1] "/usr/share/SBMLToolbox:/usr/share/SBMLToolbox/AccessModel:/usr/share/SBMLToolbox/AccessModel/Test:/usr/share/SBMLToolbox/Convenience:/usr/share/SBMLToolbox/Convenience/Test:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/AlgebraicRule:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/AssignmentRule:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/Compartment:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/CompartmentType:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/CompartmentVolumeRule:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/Constraint:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/Delay:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/Event:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/EventAssignment:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/FunctionDefinition:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/InitialAssignment:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/KineticLaw:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/LocalParameter:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/Model:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/ModifierSpeciesReference:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/Parameter:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/ParameterRule:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/Priority:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/RateRule:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/Reaction:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/Rule:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/Species:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/SpeciesConcentrationRule:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/SpeciesReference:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/SpeciesType:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/StoichiometryMath:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/Test:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/Trigger:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/Unit:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/UnitDefinition:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/structFieldnames:/usr/share/SBMLToolbox/Simulation:/usr/share/SBMLToolbox/Simulation/Test:/usr/share/SBMLToolbox/Test:/usr/share/SBMLToolbox/Test/test-data:/usr/share/SBMLToolbox/Validate_MATLAB_SBML_Structures:/usr/share/SBMLToolbox/Validate_MATLAB_SBML_Structures/Test:/usr/share/SBMLToolbox/fbc_package:/usr/share/SBMLToolbox/fbc_package/MATLAB_SBML_Structures:/usr/share/SBMLToolbox/fbc_package/MATLAB_SBML_Structures/FBCModel:/usr/share/SBMLToolbox/fbc_package/MATLAB_SBML_Structures/FBCSpecies:/usr/share/SBMLToolbox/fbc_package/MATLAB_SBML_Structures/FluxBound:/usr/share/SBMLToolbox/fbc_package/MATLAB_SBML_Structures/FluxObjective:/usr/share/SBMLToolbox/fbc_package/MATLAB_SBML_Structures/Objective:/usr/share/SBMLToolbox/fbc_package/MATLAB_SBML_Structures/structFieldnames:/usr/share/SBMLToolbox/fbc_package/MATLAB_SBML_Structures/test:/usr/share/SBMLToolbox/fbc_package/Validate_MATLAB_SBML_Structures:/usr/share/SBMLToolbox/fbc_package/Validate_MATLAB_SBML_Structures/test:/usr/share/SBMLToolbox/fbc_package/test:/usr/share/SBMLToolbox/fbc_package/test/test-data:"
$OCTAVE_PATH
[1] "/usr/share/SBMLToolbox:/usr/share/SBMLToolbox/AccessModel:/usr/share/SBMLToolbox/AccessModel/Test:/usr/share/SBMLToolbox/Convenience:/usr/share/SBMLToolbox/Convenience/Test:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/AlgebraicRule:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/AssignmentRule:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/Compartment:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/CompartmentType:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/CompartmentVolumeRule:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/Constraint:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/Delay:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/Event:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/EventAssignment:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/FunctionDefinition:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/InitialAssignment:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/KineticLaw:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/LocalParameter:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/Model:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/ModifierSpeciesReference:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/Parameter:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/ParameterRule:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/Priority:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/RateRule:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/Reaction:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/Rule:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/Species:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/SpeciesConcentrationRule:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/SpeciesReference:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/SpeciesType:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/StoichiometryMath:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/Test:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/Trigger:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/Unit:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/UnitDefinition:/usr/share/SBMLToolbox/MATLAB_SBML_Structure_Functions/structFieldnames:/usr/share/SBMLToolbox/Simulation:/usr/share/SBMLToolbox/Simulation/Test:/usr/share/SBMLToolbox/Test:/usr/share/SBMLToolbox/Test/test-data:/usr/share/SBMLToolbox/Validate_MATLAB_SBML_Structures:/usr/share/SBMLToolbox/Validate_MATLAB_SBML_Structures/Test:/usr/share/SBMLToolbox/fbc_package:/usr/share/SBMLToolbox/fbc_package/MATLAB_SBML_Structures:/usr/share/SBMLToolbox/fbc_package/MATLAB_SBML_Structures/FBCModel:/usr/share/SBMLToolbox/fbc_package/MATLAB_SBML_Structures/FBCSpecies:/usr/share/SBMLToolbox/fbc_package/MATLAB_SBML_Structures/FluxBound:/usr/share/SBMLToolbox/fbc_package/MATLAB_SBML_Structures/FluxObjective:/usr/share/SBMLToolbox/fbc_package/MATLAB_SBML_Structures/Objective:/usr/share/SBMLToolbox/fbc_package/MATLAB_SBML_Structures/structFieldnames:/usr/share/SBMLToolbox/fbc_package/MATLAB_SBML_Structures/test:/usr/share/SBMLToolbox/fbc_package/Validate_MATLAB_SBML_Structures:/usr/share/SBMLToolbox/fbc_package/Validate_MATLAB_SBML_Structures/test:/usr/share/SBMLToolbox/fbc_package/test:/usr/share/SBMLToolbox/fbc_package/test/test-data:"
$PAGER
[1] "/usr/bin/pager"
$PATH
[1] "/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin"
$PWD
[1] "/home/rnsarma"
$QT_ACCESSIBILITY
[1] "1"
$QT_AUTO_SCREEN_SCALE_FACTOR
[1] "0"
$QT_QPA_PLATFORMTHEME
[1] "gtk2"
$QT_SCALE_FACTOR
[1] "1"
$R_BROWSER
[1] "xdg-open"
$R_BZIPCMD
[1] "/bin/bzip2"
$R_DOC_DIR
[1] "/usr/share/R/doc"
$R_GZIPCMD
[1] "/bin/gzip -n"
$R_HOME
[1] "/usr/lib/R"
$R_INCLUDE_DIR
[1] "/usr/share/R/include"
$R_LIBS_SITE
[1] "/usr/local/lib/R/site-library:/usr/lib/R/site-library:/usr/lib/R/library"
$R_LIBS_USER
[1] "~/R/x86_64-pc-linux-gnu-library/3.4"
$R_PAPERSIZE
[1] "letter"
$R_PAPERSIZE_USER
[1] "a4"
$R_PDFVIEWER
[1] "/usr/bin/xdg-open"
$R_PLATFORM
[1] "x86_64-pc-linux-gnu"
$R_PRINTCMD
[1] "/usr/bin/lpr"
$R_RD4PDF
[1] "times,inconsolata,hyper"
$R_SESSION_TMPDIR
[1] "/tmp/RtmpgFGpUs"
$R_SHARE_DIR
[1] "/usr/share/R/share"
$R_SYSTEM_ABI
[1] "linux,gcc,gxx,gfortran,?"
$R_TEXI2DVICMD
[1] "/usr/bin/texi2dvi"
$R_UNZIPCMD
[1] "/usr/bin/unzip"
$R_ZIPCMD
[1] "/usr/bin/zip"
$RMARKDOWN_MATHJAX_PATH
[1] "/usr/lib/rstudio/resources/mathjax-26"
$RS_PPM_FD_READ
[1] "21"
$RS_PPM_FD_WRITE
[1] "22"
$RS_RPOSTBACK_PATH
[1] "/usr/lib/rstudio/bin/rpostback"
$RS_SHARED_SECRET
[1] "16816927778469308861804289383"
$RSTUDIO
[1] "1"
$RSTUDIO_CONSOLE_COLOR
[1] "256"
$RSTUDIO_CONSOLE_WIDTH
[1] "80"
$RSTUDIO_PANDOC
[1] "/usr/lib/rstudio/bin/pandoc"
$RSTUDIO_SESSION_PORT
[1] "8301"
$RSTUDIO_USER_IDENTITY
[1] "rnsarma"
$RSTUDIO_WINUTILS
[1] "bin/winutils"
$S_COLORS
[1] "auto"
$SED
[1] "/bin/sed"
$SESSION_MANAGER
[1] "local/rns-pbg-ws:@/tmp/.ICE-unix/1694,unix/rns-pbg-ws:/tmp/.ICE-unix/1694"
$SHELL
[1] "/bin/bash"
$SHLVL
[1] "1"
$SSH_AGENT_PID
[1] "2024"
$SSH_AUTH_SOCK
[1] "/run/user/1000/keyring/ssh"
$TAR
[1] "/bin/tar"
$TERM
[1] "xterm-256color"
$UBUNTU_MENUPROXY
[1] "1"
$USER
[1] "rnsarma"
$VTE_VERSION
[1] "5202"
$WINDOWID
[1] "65012503"
$XAUTHORITY
[1] "/home/rnsarma/.Xauthority"
$XDG_CONFIG_DIRS
[1] "/etc/xdg/xdg-mate:/etc/xdg"
$XDG_CURRENT_DESKTOP
[1] "MATE"
$XDG_DATA_DIRS
[1] "/usr/share/mate:/usr/local/share:/usr/share:/var/lib/snapd/desktop"
$XDG_GREETER_DATA_DIR
[1] "/var/lib/lightdm-data/rnsarma"
$XDG_RUNTIME_DIR
[1] "/run/user/1000"
$XDG_SEAT
[1] "seat0"
$XDG_SEAT_PATH
[1] "/org/freedesktop/DisplayManager/Seat0"
$XDG_SESSION_DESKTOP
[1] "mate"
$XDG_SESSION_ID
[1] "c2"
$XDG_SESSION_PATH
[1] "/org/freedesktop/DisplayManager/Session0"
$XDG_SESSION_TYPE
[1] "x11"
$XDG_VTNR
[1] "7"
[1] ".GlobalEnv" "tools:rstudio" "package:stats"
[4] "package:graphics" "package:grDevices" "package:utils"
[7] "package:datasets" "package:methods" "Autoloads"
[10] "package:base"
Log file: rdesktop.log
(Empty)
Log file: rsession-rnsarma.log
29 Jun 2019 12:56:46 [rsession-rnsarma] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() /var/lib/jenkins/workspace/IDE_open-source-pipeline_v1.2/src/cpp/session/SessionMain.cpp:1333
29 Jun 2019 12:58:11 [rsession-rnsarma] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() /var/lib/jenkins/workspace/IDE_open-source-pipeline_v1.2/src/cpp/session/SessionMain.cpp:1333
29 Jun 2019 12:58:37 [rsession-rnsarma] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() /var/lib/jenkins/workspace/IDE_open-source-pipeline_v1.2/src/cpp/session/SessionMain.cpp:1333
29 Jun 2019 12:59:11 [rsession-rnsarma] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() /var/lib/jenkins/workspace/IDE_open-source-pipeline_v1.2/src/cpp/session/SessionMain.cpp:1333
29 Jun 2019 13:00:18 [rsession-rnsarma] ERROR system error 2 (No such file or directory) [path=]; OCCURRED AT: rstudio::core::Error rstudio::r::session::discoverR(rstudio::r::session::RLocations*) /var/lib/jenkins/workspace/IDE_open-source-pipeline_v1.2/src/cpp/r/session/RDiscovery.cpp:62; LOGGED FROM: int main(int, char* const*) /var/lib/jenkins/workspace/IDE_open-source-pipeline_v1.2/src/cpp/session/SessionMain.cpp:1993
29 Jun 2019 13:00:25 [rsession-rnsarma] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() /var/lib/jenkins/workspace/IDE_open-source-pipeline_v1.2/src/cpp/session/SessionMain.cpp:1333
29 Jun 2019 13:02:27 [rsession-rnsarma] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() /var/lib/jenkins/workspace/IDE_open-source-pipeline_v1.2/src/cpp/session/SessionMain.cpp:1333
29 Jun 2019 13:03:58 [rsession-rnsarma] ERROR system error 2 (No such file or directory) [path=]; OCCURRED AT: rstudio::core::Error rstudio::r::session::discoverR(rstudio::r::session::RLocations*) /var/lib/jenkins/workspace/IDE_open-source-pipeline_v1.2/src/cpp/r/session/RDiscovery.cpp:62; LOGGED FROM: int main(int, char* const*) /var/lib/jenkins/workspace/IDE_open-source-pipeline_v1.2/src/cpp/session/SessionMain.cpp:1993
29 Jun 2019 13:06:38 [rsession-rnsarma] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() /var/lib/jenkins/workspace/IDE_open-source-pipeline_v1.2/src/cpp/session/SessionMain.cpp:1333
29 Jun 2019 13:07:32 [rsession-rnsarma] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() /var/lib/jenkins/workspace/IDE_open-source-pipeline_v1.2/src/cpp/session/SessionMain.cpp:1333
29 Jun 2019 13:13:36 [rsession-rnsarma] ERROR Parent terminated; LOGGED FROM: void {anonymous}::detectParentTermination() /var/lib/jenkins/workspace/IDE_open-source-pipeline_v1.2/src/cpp/session/SessionMain.cpp:1333