source code methylseekR package

General
1

Hello
I am working on WGBS Data. I am thinking of using methylseekR package. Anyone could you please let me know from where and how I can get the source code?

Thanks
Shrinka

2

You can clone the git repository (which includes the source code) from Bioconductor, you only need to have git installed in your system and run this command.

git clone https://git.bioconductor.org/packages/MethylSeekR
3

Thanks. I did it. How can I see those commands, so that I can copy them in a word file?

$ git clone https://git.bioconductor.org/packages/MethylSeekR
Cloning into 'MethylSeekR'...
remote: Enumerating objects: 211, done.
remote: Counting objects: 100% (211/211), done.
remote: Compressing objects: 100% (208/208), done.
remote: Total 211 (delta 129), reused 0 (delta 0)
Receiving objects: 100% (211/211), 1.07 MiB | 854.00 KiB/s, done.
Resolving deltas: 100% (129/129), done.

4

Sorry I don't understand what you mean, can you elaborate on your question?

5

Hello
By the word command in a word file, I mean

getMethylationStats(myobj[[1]],plot=FALSE,both.strands=FALSE)

getMethylationStats(myobj[[1]],plot=TRUE,both.strands=FALSE)

getCoverageStats(myobj[[1]],plot=FALSE,both.strands=FALSE)

getCoverageStats(myobj[[1]],plot=TRUE,both.strands=FALSE)

6

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