I develop a bioinformatics project in rstudio, which consists of some drivers script to generate data and rmd files for summarizing results. When someone check out my project to reproduce my analyses. I want them to be able to install all the package the project depends on easily.
Do I specify dependencies as if it's a "package" using DESCRIPTION.txt (http://r-pkgs.had.co.nz/description.html#dependencies )
Or is there another way to do this?
nwerth
March 28, 2018, 7:51pm
2
There's no standard way to do this outside of a package. I suggest making a README.md
file which describes
What the project is
Required packages
Other required software, if any
How to run the analysis
As a bonus, these types of files are incredibly useful when revisiting older projects. I make them even for projects I never expect to share.
Thank you for the suggestion. I also thought about using putting it in a docker container but I think a README.md will do for now.
chasec
April 3, 2018, 3:01pm
4
You might also look at Packrat, it might be heavier than what you want but it will help with your package dependency worries.
Not my answer but this might be a good reference for you: