I have installed a python program using the Terminal Tab. I then added the path to the installed library to the environment PATH; and checked that I can find the installed program
python3 -m pip install --user --upgrade cutadapt PATH=$HOME/bin:"$PATH" which cutadapt
And that works. The problem is when I try to use that program through an R script
system2("which", args = "cutadapt")
then it can't find it.
Any best practices out there to use unix installed programs with Rstudio cloud?