the help to generate a basic allele score using your independently associated SNPs.

[RREEHHAAMM]

I have two independent associated snps

SNP BETA P BETA_rep P_rep
1 rs1051730 10.72 1.560e-10 10.63 5.860e-11
4 rs6955346 12.29 1.297e-10 11.45 6.298e-07

I have to generate basic score allele using these snps by using R to make my profile.raw file.

could anyone help me please?

[williaml]

You assume that we have myprofile.raw.

Can you provide a reproducible example? Perhaps even rewrite your post so that it is more readable so that people might want to help you.

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