the help to generate a basic allele score using your independently associated SNPs.

[RREEHHAAMM]

I have two independent associated snps

SNP BETA P BETA_rep P_rep
1 rs1051730 10.72 1.560e-10 10.63 5.860e-11
4 rs6955346 12.29 1.297e-10 11.45 6.298e-07

I have to generate basic score allele using these snps by using R to make my profile.raw file.

could anyone help me please?

[williaml]

You assume that we have myprofile.raw.

Can you provide a reproducible example? Perhaps even rewrite your post so that it is more readable so that people might want to help you.

FAQ: What's a reproducible example (`reprex`) and how do I do one?

Why reprex? Getting unstuck is hard. Your first step here is usually to create a reprex, or reproducible example. The goal of a reprex is to package your code, and information about your problem so that others can run it and feel your pain. Then, hopefully, folks can more easily provide a solution. What's in a Reproducible Example? Parts of a reproducible example: background information - Describe what you are trying to do. What have you already done? complete set up - include any library() calls and data to reproduce your issue. data for a reprex: Here's a discussion on setting up data for a reprex make it run - include the minimal code required to reproduce your error on the data p…