Here is a section of an Rmarkdown notebook that I've been running. The actual bits of R code run fine within the notebook (which seems to use rsession.exe for a couple seconds) but when I try to Knit an HTML document the first arrange() function cases an rterm.exe process to run for a long time, I have been stopping it after 5 minutes or so.
library(tidyverse)
library(knitr)
library(formatR)
# invalidate cache when the tufte version changes
knitr::opts_chunk$set(tidy = FALSE, htmltools.dir.version = FALSE)
options(scipen=1, digits=4)
library(nycflights13)
arrange(flights,desc(is.na(dep_time)))
#> # A tibble: 336,776 x 19
#> year month day dep_time sched_dep_time dep_delay arr_time
#> <int> <int> <int> <int> <int> <dbl> <int>
#> 1 2013 1 1 NA 1630 NA NA
#> 2 2013 1 1 NA 1935 NA NA
#> 3 2013 1 1 NA 1500 NA NA
#> 4 2013 1 1 NA 600 NA NA
#> 5 2013 1 2 NA 1540 NA NA
#> 6 2013 1 2 NA 1620 NA NA
#> 7 2013 1 2 NA 1355 NA NA
#> 8 2013 1 2 NA 1420 NA NA
#> 9 2013 1 2 NA 1321 NA NA
#> 10 2013 1 2 NA 1545 NA NA
#> # ... with 336,766 more rows, and 12 more variables: sched_arr_time <int>,
#> # arr_delay <dbl>, carrier <chr>, flight <int>, tailnum <chr>,
#> # origin <chr>, dest <chr>, air_time <dbl>, distance <dbl>, hour <dbl>,
#> # minute <dbl>, time_hour <dttm>
arrange(flights,desc(arr_delay))
#> # A tibble: 336,776 x 19
#> year month day dep_time sched_dep_time dep_delay arr_time
#> <int> <int> <int> <int> <int> <dbl> <int>
#> 1 2013 1 9 641 900 1301 1242
#> 2 2013 6 15 1432 1935 1137 1607
#> 3 2013 1 10 1121 1635 1126 1239
#> 4 2013 9 20 1139 1845 1014 1457
#> 5 2013 7 22 845 1600 1005 1044
#> 6 2013 4 10 1100 1900 960 1342
#> 7 2013 3 17 2321 810 911 135
#> 8 2013 7 22 2257 759 898 121
#> 9 2013 12 5 756 1700 896 1058
#> 10 2013 5 3 1133 2055 878 1250
#> # ... with 336,766 more rows, and 12 more variables: sched_arr_time <int>,
#> # arr_delay <dbl>, carrier <chr>, flight <int>, tailnum <chr>,
#> # origin <chr>, dest <chr>, air_time <dbl>, distance <dbl>, hour <dbl>,
#> # minute <dbl>, time_hour <dttm>
arrange(flights,dep_time)
#> # A tibble: 336,776 x 19
#> year month day dep_time sched_dep_time dep_delay arr_time
#> <int> <int> <int> <int> <int> <dbl> <int>
#> 1 2013 1 13 1 2249 72 108
#> 2 2013 1 31 1 2100 181 124
#> 3 2013 11 13 1 2359 2 442
#> 4 2013 12 16 1 2359 2 447
#> 5 2013 12 20 1 2359 2 430
#> 6 2013 12 26 1 2359 2 437
#> 7 2013 12 30 1 2359 2 441
#> 8 2013 2 11 1 2100 181 111
#> 9 2013 2 24 1 2245 76 121
#> 10 2013 3 8 1 2355 6 431
#> # ... with 336,766 more rows, and 12 more variables: sched_arr_time <int>,
#> # arr_delay <dbl>, carrier <chr>, flight <int>, tailnum <chr>,
#> # origin <chr>, dest <chr>, air_time <dbl>, distance <dbl>, hour <dbl>,
#> # minute <dbl>, time_hour <dttm>
arrange(flights,air_time)
#> # A tibble: 336,776 x 19
#> year month day dep_time sched_dep_time dep_delay arr_time
#> <int> <int> <int> <int> <int> <dbl> <int>
#> 1 2013 1 16 1355 1315 40 1442
#> 2 2013 4 13 537 527 10 622
#> 3 2013 12 6 922 851 31 1021
#> 4 2013 2 3 2153 2129 24 2247
#> 5 2013 2 5 1303 1315 -12 1342
#> 6 2013 2 12 2123 2130 -7 2211
#> 7 2013 3 2 1450 1500 -10 1547
#> 8 2013 3 8 2026 1935 51 2131
#> 9 2013 3 18 1456 1329 87 1533
#> 10 2013 3 19 2226 2145 41 2305
#> # ... with 336,766 more rows, and 12 more variables: sched_arr_time <int>,
#> # arr_delay <dbl>, carrier <chr>, flight <int>, tailnum <chr>,
#> # origin <chr>, dest <chr>, air_time <dbl>, distance <dbl>, hour <dbl>,
#> # minute <dbl>, time_hour <dttm>
#longest
arrange(flights,desc(distance))
#> # A tibble: 336,776 x 19
#> year month day dep_time sched_dep_time dep_delay arr_time
#> <int> <int> <int> <int> <int> <dbl> <int>
#> 1 2013 1 1 857 900 -3 1516
#> 2 2013 1 2 909 900 9 1525
#> 3 2013 1 3 914 900 14 1504
#> 4 2013 1 4 900 900 0 1516
#> 5 2013 1 5 858 900 -2 1519
#> 6 2013 1 6 1019 900 79 1558
#> 7 2013 1 7 1042 900 102 1620
#> 8 2013 1 8 901 900 1 1504
#> 9 2013 1 9 641 900 1301 1242
#> 10 2013 1 10 859 900 -1 1449
#> # ... with 336,766 more rows, and 12 more variables: sched_arr_time <int>,
#> # arr_delay <dbl>, carrier <chr>, flight <int>, tailnum <chr>,
#> # origin <chr>, dest <chr>, air_time <dbl>, distance <dbl>, hour <dbl>,
#> # minute <dbl>, time_hour <dttm>
#shortest
arrange(flights,distance)
#> # A tibble: 336,776 x 19
#> year month day dep_time sched_dep_time dep_delay arr_time
#> <int> <int> <int> <int> <int> <dbl> <int>
#> 1 2013 7 27 NA 106 NA NA
#> 2 2013 1 3 2127 2129 -2 2222
#> 3 2013 1 4 1240 1200 40 1333
#> 4 2013 1 4 1829 1615 134 1937
#> 5 2013 1 4 2128 2129 -1 2218
#> 6 2013 1 5 1155 1200 -5 1241
#> 7 2013 1 6 2125 2129 -4 2224
#> 8 2013 1 7 2124 2129 -5 2212
#> 9 2013 1 8 2127 2130 -3 2304
#> 10 2013 1 9 2126 2129 -3 2217
#> # ... with 336,766 more rows, and 12 more variables: sched_arr_time <int>,
#> # arr_delay <dbl>, carrier <chr>, flight <int>, tailnum <chr>,
#> # origin <chr>, dest <chr>, air_time <dbl>, distance <dbl>, hour <dbl>,
#> # minute <dbl>, time_hour <dttm>
Created on 2019-01-02 by the reprex package (v0.2.1)