Unable to Install DESeq2 on cloud

bioconductor

#1

https://rstudio.cloud/project/204732

I continue to get the same error messages when trying to install DESeq2 on the RStudio cloud:

The downloaded source packages are in
‘/tmp/Rtmp5g6NlX/downloaded_packages’
installation path not writeable, unable to update packages: class, codetools, mgcv
Warning messages:
1: In install.packages(pkgs = doing, lib = lib, repos = repos, ...) :
installation of package ‘SummarizedExperiment’ had non-zero exit status
2: In install.packages(pkgs = doing, lib = lib, repos = repos, ...) :
installation of package ‘DESeq2’ had non-zero exit status

I have tried both the simple installation:

if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DESeq2", version = "3.8")

and pre-installing the offending packages followed by the simple installation. Is it even possible to install from bioconductor on the cloud?


#2

AHHH, nevermind. Apparently DESeq2 runs just find despite the error message.