Hello,
I am trying to do a violin plot from data of an RNAseq. I have a file with 8 columns, one for gene ensemble id one for gene names and 6 for samples (1 group condition, and 1 group control, with three replicates in each). I did all the steps to arrive until the TMM and I would like to do a violin plot on all the genes for each triplicate. I managed to do boxplots but I think that violin plots are more informative. I have used the vioplot package on the same input of the boxplot, but my violin plots are cut, truncated at the y=0 and even if I increase the y axis to go below zero, my plots are still cut. I have tried to remove the x axis but it did not work. Does someone know why and how to fix it?
Also using another package, I just want to have an entire violin plot! Thanks in advance.
Marta
This topic was automatically closed 21 days after the last reply. New replies are no longer allowed.
If you have a query related to it or one of the replies, start a new topic and refer back with a link.