jdlong
April 8, 2018, 3:04pm
1
I'm getting an odd error message when I try to install tidygraph from github:
> install_github("thomasp85/tidygraph")
Downloading GitHub repo thomasp85/tidygraph@master
from URL https://api.github.com/repos/thomasp85/tidygraph/zipball/master
Installing tidygraph
Installation failed: cannot open the connection
Warning messages:
1: In normalizePath(path) :
path[1]="/home/docker/plogr_0.2.0.tar.gz": No such file or directory
2: In read.dcf(path) :
cannot open compressed file '/home/docker/plogr_0.2.0.tar.gz/DESCRIPTION', probable reason 'No such file or directory'
>
Any thoughts on what's up? This installs fine on my local Mac. It looks like a path issue of some kind.
josh
April 9, 2018, 6:35pm
2
This worked for me in a new project. What is your sessionInfo()?
> sessionInfo()
R version 3.4.4 (2018-03-15)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.3 LTS
Matrix products: default
BLAS: /usr/lib/atlas-base/atlas/libblas.so.3.0
LAPACK: /usr/lib/atlas-base/atlas/liblapack.so.3.0
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8 LC_COLLATE=C.UTF-8
[5] LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8 LC_PAPER=C.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] devtools_1.13.5
loaded via a namespace (and not attached):
[1] httr_1.3.1 compiler_3.4.4 R6_2.2.2 tools_3.4.4 withr_2.1.2 curl_3.2 memoise_1.1.0
[8] git2r_0.21.0 digest_0.6.15
This is actually a text file of the log of installing tidygraph:
tidygraph.pdf (148.5 KB)
jdlong
April 9, 2018, 7:02pm
3
josh:
sessionInfo()
Josh, session info is as follows:
> sessionInfo()
R version 3.4.4 (2018-03-15)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.3 LTS
Matrix products: default
BLAS: /usr/lib/atlas-base/atlas/libblas.so.3.0
LAPACK: /usr/lib/atlas-base/atlas/liblapack.so.3.0
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
[4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
[7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] MASS_7.3-49 devtools_1.13.5 bindrcpp_0.2.2 forcats_0.3.0
[5] stringr_1.3.0 dplyr_0.7.4 purrr_0.2.4 readr_1.1.1
[9] tidyr_0.8.0 tibble_1.4.2 ggplot2_2.2.1 tidyverse_1.2.1
loaded via a namespace (and not attached):
[1] xfun_0.1 reshape2_1.4.3 haven_1.1.1 lattice_0.20-35
[5] colorspace_1.3-2 htmltools_0.3.6 yaml_2.1.18 rlang_0.2.0
[9] pillar_1.2.1 foreign_0.8-69 glue_1.2.0 withr_2.1.2
[13] modelr_0.1.1 readxl_1.0.0 bindr_0.1.1 plyr_1.8.4
[17] munsell_0.4.3 gtable_0.2.0 cellranger_1.1.0 rvest_0.3.2
[21] psych_1.8.3.3 evaluate_0.10.1 memoise_1.1.0 knitr_1.20
[25] parallel_3.4.4 broom_0.4.4 Rcpp_0.12.16 scales_0.5.0
[29] backports_1.1.2 jsonlite_1.5 mnormt_1.5-5 hms_0.4.2
[33] digest_0.6.15 stringi_1.1.7 bookdown_0.7 grid_3.4.4
[37] rprojroot_1.3-2 cli_1.0.0 tools_3.4.4 magrittr_1.5
[41] lazyeval_0.2.1 crayon_1.3.4 pkgconfig_2.0.1 xml2_1.2.0
[45] lubridate_1.7.3 assertthat_0.2.0 rmarkdown_1.9 httr_1.3.1
[49] rstudioapi_0.7 R6_2.2.2 nlme_3.1-131.1 compiler_3.4.4
>