Error building Bioconductor package within shiny app

shiny
2

You should not need to add the repo options inside your code, shinyapps.io will handle that piece.

Locally you will want to set at least BioCsoft before installing the packages.

After installing MSnbase, I found that I needed to update BiocParallel.

I was then able to deploy the Old Faithful sample application as a single page Shiny app.R with:

library("MSnbase")
data(msnset)
mean(exprs(filterNA(msnset)))

at the top.

You may find that updating impute to 1.54.0 gets you further.