I was following a blog post about how to deploy a bookdown book to a netlify site using Github actions. I followed all of the steps, I could successfully push files to my Github repo, and the action got 3.5 minutes in before failing. I'm using the default yaml file (the one you get from typing use_github_action("bookdown.yaml") in studio).
The error message is as follows.
Rscript -e 'bookdown::render_book("index.Rmd", quiet = TRUE)'
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shell: /bin/bash -e {0}
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env:
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GITHUB_PAT: ***
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R_LIBS_USER: /Users/runner/work/_temp/Library
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TZ: UTC
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_R_CHECK_SYSTEM_CLOCK_: FALSE
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NOT_CRAN: true
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Collecting package metadata (current_repodata.json): ...working... failed
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NotWritableError: The current user does not have write permissions to a required path.
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path: /usr/local/miniconda/pkgs/cache/b89cf7bf.json
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uid: 501
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gid: 20
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If you feel that permissions on this path are set incorrectly, you can manually
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change them by executing
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$ sudo chown 501:20 /usr/local/miniconda/pkgs/cache/b89cf7bf.json
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In general, it's not advisable to use 'sudo conda'.
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Quitting from lines 64-66 (r_and_python_book.Rmd)
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Error: Error: Error 1 occurred creating conda environment r-reticulate
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Execution halted
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Error: Process completed with exit code 1.
Here is the full bookdown.yaml file:
on:
push:
branches:
- main
- master
name: bookdown
jobs:
build:
runs-on: macOS-latest
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
steps:
- name: Checkout repo
uses: actions/checkout@v2
- name: Setup R
uses: r-lib/actions/setup-r@v1
- name: Install pandoc
run: |
brew install pandoc
- name: Cache Renv packages
uses: actions/cache@v2
with:
path: $HOME/.local/share/renv
key: r-${{ hashFiles('renv.lock') }}
restore-keys: r-
- name: Cache bookdown results
uses: actions/cache@v2
with:
path: _bookdown_files
key: bookdown-${{ hashFiles('**/*Rmd') }}
restore-keys: bookdown-
- name: Install packages
run: |
R -e 'install.packages("renv")'
R -e 'renv::restore()'
- name: Build site
run: Rscript -e 'bookdown::render_book("index.Rmd", quiet = TRUE)'
- name: Install npm
uses: actions/setup-node@v1
- name: Deploy to Netlify
# NETLIFY_AUTH_TOKEN and NETLIFY_SITE_ID added in the repo's secrets
env:
NETLIFY_AUTH_TOKEN: ${{ secrets.NETLIFY_AUTH_TOKEN }}
NETLIFY_SITE_ID: ${{ secrets.NETLIFY_SITE_ID }}
run: |
npm install netlify-cli -g
netlify deploy --prod --dir _book